Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 1293 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella sp. ANA-3

 Score = 1512 bits (3915), Expect = 0.0
 Identities = 758/1281 (59%), Positives = 966/1281 (75%), Gaps = 5/1281 (0%)

Query: 26   LGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKIEYPA 85
            L +C   D  R  +R+   +K  +   +     ++A     +   VEQR +  PKI+YP 
Sbjct: 15   LKQCFQSDASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKVEQRLKARPKIQYPD 74

Query: 86   LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAA 145
             LPVS  R++IA+AI+ +QVVI+AGETGSGKTTQLPKIC ELG G  G IGHTQPRRLAA
Sbjct: 75   NLPVSGMREEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAA 134

Query: 146  RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205
            RSVA R+AEE+++ LG  VG+KVRF D +  ++ IKLMTDGILLAE+ +DR+L+QYDTII
Sbjct: 135  RSVATRVAEELQSPLGELVGFKVRFADALKSESYIKLMTDGILLAELTSDRYLDQYDTII 194

Query: 206  IDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
            IDEAHERSLNIDFILGYLKQ+L +RPDLK+IITSATID ERFSKHF+NAPIIEVSGRTYP
Sbjct: 195  IDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHFNNAPIIEVSGRTYP 254

Query: 266  VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325
            VE RYRPL    D+E+D DQ+EGIF AVDEL  EGLGDILIFMNGEREIRDTA+ L++RN
Sbjct: 255  VETRYRPLV--QDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIRDTAEQLNRRN 312

Query: 326  LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 385
             RDTEI+PLYARLS GEQ+K+F  H GRRIVLATNVAETSLTVPGI+YVIDPGTARISRY
Sbjct: 313  YRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRY 372

Query: 386  SYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLA 445
            SYRTKVQRLPIEPISQASANQR+GRCGR   GICIRLY E DF SRP FTDPEILRTNLA
Sbjct: 373  SYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPAFTDPEILRTNLA 432

Query: 446  SVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLA 505
            SVILQM A+GLGDI AFPF+E PD R+I+DG  LLEEL A+  Q  +    LT  G+QL+
Sbjct: 433  SVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNIV--LTPLGRQLS 490

Query: 506  RLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSD 565
            ++P+DPRLARMV+E+ +LGCL+EV++IA+ LSIQDPRERP DK+Q++D+ HRRF    SD
Sbjct: 491  QIPVDPRLARMVVESHQLGCLQEVLVIAAGLSIQDPRERPMDKKQASDEAHRRFADPHSD 550

Query: 566  FLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLND 625
            F++ VNLW ++ +QQK L+++QFR++C+ +YL YLRVREWQD+YTQL Q+  ++ ++LN+
Sbjct: 551  FVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAVHDLKWRLNE 610

Query: 626  EPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELV 685
             P +Y A+H A+L GLLSHIG KD   NEY GARN +F +FP S L KK PKW+M+AEL 
Sbjct: 611  TPANYDALHRALLSGLLSHIGFKDNN-NEYLGARNRKFFVFPGSPLAKKGPKWIMAAELT 669

Query: 686  ETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRL 745
            ETSKL+AR  AKIEP+W+EPLA HL K+++ EPH+  K  +V+A+E  +LYG+ +V +R 
Sbjct: 670  ETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLYGLTVVHRRR 729

Query: 746  VNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEE 805
            V YG I+PV +REIFIRSAL EG  +TK AFF  N+ LL +VE LEHKSRRRDILVD++ 
Sbjct: 730  VQYGPINPVEAREIFIRSALAEGQLQTKEAFFLANQKLLEDVEALEHKSRRRDILVDEQV 789

Query: 806  LFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPNFWHQ 865
            L  FY+ R+   + +   F +WWK A R  PDLL F K +L +  A HI+ LD+P+ WH+
Sbjct: 790  LMDFYEPRIPEGIYNAPKFFSWWKEARRTQPDLLDFNKSLLMQRSADHISALDFPDTWHK 849

Query: 866  GNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTL 925
            GN++L+LSY F+P  + DGV+VHIP+ +LNQ++   FDW + G+R E  V+LIKSLPK L
Sbjct: 850  GNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVALIKSLPKGL 909

Query: 926  RKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLKITYR 985
            R+NFVPAP+YA A +  + PF   LLDAM K+L RM+G  V  ED+ + Q+PAHL++ ++
Sbjct: 910  RRNFVPAPDYARACVQAMQPFSASLLDAMCKQLLRMSGTRVNPEDFDVTQMPAHLQMNFK 969

Query: 986  AVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQQKRG 1045
              D + + + +   L  LK  L+  V + + QVAD  IE+  L  WSFG+LPK ++Q++G
Sbjct: 970  IEDDKGKLVAQGRVLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGDLPKQFEQRKG 1029

Query: 1046 GFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLPNKSK 1105
             ++VRA+PAL+D KDSV IKLF+ E E  +A R G RRL+LLN+PSP+K+L   LPNK+K
Sbjct: 1030 NYQVRAFPALIDNKDSVAIKLFDDEFEAQTAHRQGLRRLLLLNIPSPVKHLQQALPNKAK 1089

Query: 1106 LGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVVEIAK 1165
            L +YFNP+G+V  LIDD IA  V +L++E+   V +   FE  K+ VR EL  T  +IA 
Sbjct: 1090 LAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDAAQFEQAKDWVRQELNPTAEQIAL 1149

Query: 1166 QVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDILRYMR 1225
            +VE ILT    I KR KGK+   +AFA+SD+++Q++ L+F GF   CGW RL D+ RY++
Sbjct: 1150 KVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEACGWNRLADVARYLK 1209

Query: 1226 AIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEELRVS 1285
            AIE R++KLPVDP +DRLHM  I  V       L K+P+   +P  + E RWM+EE RVS
Sbjct: 1210 AIETRIDKLPVDPTRDRLHMQSITKVQEALAAQLAKVPRSQPVPAALIEARWMIEEYRVS 1269

Query: 1286 YFAQQLGTPYPVSDKRIINAI 1306
             FAQ LGT YP+S+KRI+N I
Sbjct: 1270 CFAQALGTAYPISEKRILNHI 1290