Pairwise Alignments

Query, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ATP-dependent helicase HrpB (RefSeq) from Shewanella sp. ANA-3

 Score =  236 bits (602), Expect = 6e-66
 Identities = 159/437 (36%), Positives = 235/437 (53%), Gaps = 11/437 (2%)

Query: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146
           LP+      +  A A H  VI+   TG+GK+T LP    +      G I   +PRR+AAR
Sbjct: 4   LPIHSLLPSLRDAFAKHAQVILEAPTGAGKSTALPLAMLDWPEIS-GRILMLEPRRVAAR 62

Query: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206
           SVA  IA   +  +G  VGY+VR   ++S +T+++++T+GIL   IQ D  L   + II 
Sbjct: 63  SVAQFIASCRQQAVGQEVGYRVRGESKVSGETRLEIVTEGILTRMIQQDPELTGIEMIIF 122

Query: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265
           DE HER L  D  L    ++    R DLK++  SAT+     ++   +A +++  GR++P
Sbjct: 123 DEIHERHLTTDLGLALALEVQSSLRDDLKILAMSATLSGLTLAELMPDAALLQSEGRSFP 182

Query: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKR- 324
           V++RYRP+AG         ++  +  A   + D+G  DIL+F+ G+ EI   A  L +R 
Sbjct: 183 VDIRYRPVAGQQHWLDHLSRV--VLDAAISVGDKGPQDILVFLPGKAEILRVAQYLEERL 240

Query: 325 NLRDTEIVPLYARLSAGEQNKIFQPHAGRR-IVLATNVAETSLTVPGIKYVIDPGTARIS 383
           +     + PLY  LSA EQ++  +  + RR IVL+TNVAE+SLT+ GI  VID G  R +
Sbjct: 241 DSSHVAVCPLYGELSAQEQDRAIKADSSRRKIVLSTNVAESSLTIEGIGLVIDSGYKRQA 300

Query: 384 RYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTN 443
            ++ +T V RL ++ ISQASA QR GR GR   G CIRL+ +E+     +  +PEI + +
Sbjct: 301 SFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGECIRLWGQEEHQRLLKADEPEISQAD 360

Query: 444 LASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQ 503
           L ++       G         + AP   N     +LL+ LG +     D   +LT  GK 
Sbjct: 361 LVAMAHDCAYWGAKSFSDLLLLTAPPTVNEALAWQLLQRLGMV-----DEHNKLTAHGKA 415

Query: 504 LARLPIDPRLARMVLEA 520
              L   PRLA M+L A
Sbjct: 416 AYELGCHPRLAHMLLVA 432