Pairwise Alignments

Query, 537 a.a., sensor domain-containing diguanylate cyclase from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (268), Expect = 1e-27
 Identities = 87/307 (28%), Positives = 140/307 (45%), Gaps = 36/307 (11%)

Query: 232 GVMVGVVRLSTYFEKLVQISVMEQDLDMRVIDTGFDSEDSPVLYQSPMWRADDEPKIERK 291
           GV+  +      FE+  + S  EQ  +  + D   +S    + YQ+  + AD++ + E  
Sbjct: 304 GVLAKIYAQKQQFEQAYEYSRKEQHYNQLIFD---ESRMKTLAYQAAKFNADEQAR-EIN 359

Query: 292 LVLPNRDWVLEFELHQPINHSEEWVLLGLGLGGVIISLLLSYIMRMQLEEKQRLTDMIEE 351
           L+   R+  +  ++ +   ++   + + + +GG+    +L  +  +Q     R+  M   
Sbjct: 360 LLNKERELYIAQQMVKEREYTNMLMFITILVGGLFFLAILLVVGNLQKRRFMRMAKM--- 416

Query: 352 RTAELRYLVEHDSLTNIYNR--------RFFSQHLCKMLDEKQSFTLISFDIDRFKQIND 403
                      D+LT + NR          F Q   +  D    + +I FD+D FK+IND
Sbjct: 417 -----------DALTGVLNRGAGQDLGENMFVQAAARGGD----YCVILFDLDHFKRIND 461

Query: 404 SYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVE 463
           SYGH  GD+AL  VV+V+K  +   D+FAR GG+EFA+     +E       E+ R  +E
Sbjct: 462 SYGHGTGDWALKKVVEVLKPHIRNGDVFARIGGEEFALFLPYANEAKGLDVAEQCRSRIE 521

Query: 464 AEPVMLNAETPLTLTISIGAS--INCEYSEPEILQSVDDQLYLSKSKGRNRVSIAQ---Q 518
           A    L+     T+T S G S     + S   +L   D  LY +KS GRN VS  Q    
Sbjct: 522 AIDTHLSGH-KFTITASFGVSGMTKDDLSLDPLLHRADMALYAAKSNGRNCVSCYQDALM 580

Query: 519 CSKVESN 525
           C K  +N
Sbjct: 581 CDKRVTN 587