Pairwise Alignments

Query, 392 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1099 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors from Synechococcus elongatus PCC 7942

 Score =  105 bits (263), Expect = 5e-27
 Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 8/170 (4%)

Query: 228  RLRSIQDELTGAFNRRHFKEQVQQKLKQSKQKSM---VALVDIDHFKQINDSYGHDIGDS 284
            R  +++D LTG FNRR+ +E  +Q+L ++K+      + ++DID+FK+ ND +GHD GD 
Sbjct: 906  RQENLRDPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGHDAGDM 965

Query: 285  VITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAIS---VGFHVE 341
            V+  V R L +      +V R+GGEE AI       E  ++  D +R AI+   + +H +
Sbjct: 966  VLKQVARALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLIISYHEQ 1025

Query: 342  QQPLKVSVSIGAVIF-ESSHEYGEVLRQADKALYQAKQQGRNRIMLQDVS 390
              P  +++SIG   F ES      +++ AD +LYQAK  GRN +++   S
Sbjct: 1026 TLP-SLTISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCVVVHQPS 1074