Pairwise Alignments

Query, 338 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  239 bits (610), Expect = 7e-68
 Identities = 129/324 (39%), Positives = 193/324 (59%), Gaps = 4/324 (1%)

Query: 11  IVYLSILAIAFVAWRWLTPLATAISVNANAAPIKIAVSQTPLSSPFYLADQLGFFKQQGI 70
           IV L ++ +  ++  W    A A         +KIA S TPLS+P  +A +L  FK   +
Sbjct: 6   IVLLVLVVMGLLSINWWGGKAPATEPPIK---LKIATSTTPLSAPLIIARELELFKPYNL 62

Query: 71  DVELVACSGGVQCSQALFQGAVSYATASESVAMFSSFERQDFLILASFVQSDNDLKLLAL 130
           D+EL+   GG  C QA+ QG    AT+SE+V MF+ F+R DF +LASFV+SDNDLKLL L
Sbjct: 63  DIELIPLRGGHLCFQAMIQGVADLATSSETVIMFNGFQRSDFRLLASFVESDNDLKLLTL 122

Query: 131 ESETIRSVADLHNKRVGMIRASASEFYFDSLLLANNLKGIPIDKVYGTADQLYQQLFDKQ 190
             E  +S+  L +K++GM++AS+SEF+ D+ L+ +  +     KV+ +   L   L    
Sbjct: 123 NDEQPKSITQLSDKKIGMVKASSSEFFADAFLIISGHQQQDFQKVFMSPQALGPALLAGD 182

Query: 191 LDAISIWEPWGYKIGVAAESKVTNLSLPGIYTLSFNLLTMKPTTEEEKQRSLAILKALKQ 250
           +DAIS+WEP+GYK+       +      GIY LSFNL+T        +++   IL+ALK 
Sbjct: 183 VDAISVWEPFGYKLIEEHGDTIYQYPGKGIYNLSFNLVTSAVNARLHEKQHADILRALKS 242

Query: 251 AIDWIHQNPERTRYRVAGVLNIDEKQLRWSWQDYSFRLSLGNTLLTNLQLQGRWALENKL 310
           A ++I+Q+P+  +  ++  L+I   +L W+W DY FRLSL N+L++NL  Q RWA+ +  
Sbjct: 243 AQNFINQHPQSAKQIISDYLDISLSELEWAWNDYVFRLSLNNSLISNLHAQARWAIASGA 302

Query: 311 VHGQ-LPDYRQLMADDLLSEAVKN 333
           V  Q  PD+R L+ D  L +A+ N
Sbjct: 303 VDAQTTPDFRLLLDDSALKQALDN 326