Pairwise Alignments

Query, 667 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., cyclic nucleotide phosphodiesterase, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 75.9 bits (185), Expect = 5e-18
 Identities = 107/477 (22%), Positives = 187/477 (39%), Gaps = 67/477 (14%)

Query: 190 RYRGLHLVANNLEFLGEYEEALQTYDLLLSLLPDYVDPS---GIYNDVGLLMGTLGQYES 246
           RY  L L  +   F G+ + A++ Y+ LL    +  D     G+  ++ +   TL  +E 
Sbjct: 191 RYNLLELATSYRRF-GDPDTAIRYYEDLLQKYTEAKDTFAMVGVKAEMAMAYETLEDFEK 249

Query: 247 ALDYLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESILYFEQAKAHLTPANYLFG 306
           AL Y    L   L Q + + +A    ++  T  K GR +E+    E A   L P      
Sbjct: 250 ALVYYKDVLAGWLAQKDEISVAATRVNMSGTLIKLGRLKEAKAELELAFPELKPE----- 304

Query: 307 LAYVHLGLGKAYIELNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFKEQKYAQ 366
               H+G           V   +HLF A   + + K   L  L  L + +  F+  + ++
Sbjct: 305 ----HVG-----------VYAFEHLFMAQILLAEGKP--LDALPLLEVGEESFRNAQNSR 347

Query: 367 AIDYANQAVAISESASLPRIKAQAYLQLAKIAEAEQQYQEALSWYRQYAESELLLRNTEQ 426
            +            A L   K+Q Y  L   A A    +   + + Q        R TE 
Sbjct: 348 GL------------AELYATKSQVYAALEDWANAFYTLEIQNALHTQLDNQLQSQRTTEM 395

Query: 427 RKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVIVFALI-LPIAH 485
           R  F   D  + E E ++ V      YQ L EK   +  +   L  ++IV  +I L I  
Sbjct: 396 RTRF---DTDRIENENRQLVA-----YQRLREKEMAILQENKFLQFVIIVMGIIILSIVS 447

Query: 486 YRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLA-------------LLD 532
               K+  +++      ++ R +  + LT +   + T H   +              L D
Sbjct: 448 IFAYKQAQRSK------LMERLALTDHLTQLANRRHTYHEGEIMFRSARPGSPLSVILFD 501

Query: 533 IDQLRQFNERHGYERGDIALQNTINTLLHQLRAKEFVCRLGDDEFLVVMPNCRRTLSETR 592
            D  ++ N+  G++ GD  L     +   Q+R  + V R+G +EFL ++P+     +   
Sbjct: 502 ADHFKKINDHFGHDVGDKVLIAMAQSSAGQMRRGDLVGRIGGEEFLALLPHTTLEQAVEI 561

Query: 593 LFVLHHALNGKTPTDAKSTVGLSVTLSYLAVESGL-ASFTHFYPKLDSALSIAKQSG 648
              L   +     ++    +G+S++     ++S    +F+ F  + D AL  AK +G
Sbjct: 562 AERLRLTIETTDLSEVAPGLGMSISAGVATLDSSRDKNFSSFLNRADHALYRAKHNG 618