Pairwise Alignments

Query, 667 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.0 bits (227), Expect = 7e-23
 Identities = 116/503 (23%), Positives = 201/503 (39%), Gaps = 79/503 (15%)

Query: 203 FLGEYEEALQTYDLLLSLLPDYVDPSGIYN-------------DVGLLMGTLGQYESALD 249
           + G++ EAL           D V   G+Y              D+       G  ESA+ 
Sbjct: 161 YTGDFSEALD----------DLVTAQGLYESLNLTGWANINLTDIATSFRRYGDPESAIK 210

Query: 250 YLNKALEYRLEQGNPLLIAQVEHSLGDTYFKQGRYEESI-------LYFEQAKAHLTPAN 302
           Y  K  E  L+ GN   +A V   +G    + G++E++I        YF+  K ++  A 
Sbjct: 211 YYKKLKELYLKNGNKEQVANVMSEIGIALDEMGKHEQAIEHFRFSYQYFKDQKLNIVAAI 270

Query: 303 YLFGLAYVHLGLGKAYIELNNFVEGDQHLFQALEYVNQHKDQHLQGLIYLSLAQAHFKEQ 362
               +AY       + I+LN   E + +L +A   ++++ +      + L + +   ++ 
Sbjct: 271 NATNIAY-------SLIQLNRLDEAENYLNEAAPDISEN-EPAAYSFMKLFMGKIRNQQG 322

Query: 363 KYAQAID---YANQAVAISES----ASLPRIKAQAYLQLAKIAEAEQQYQEALSWYRQYA 415
           +Y +A+D    A  A  +  +      L ++K+  Y  +  + +A    QE ++  ++  
Sbjct: 323 RYQEALDELSAAEHAFRVMHNDRGLIQLLQLKSDIYAAMEDLPQAYHILQEFIALTKKVD 382

Query: 416 ESELLLRNTEQRKAFEALDLAKAELEQKRGVNFWRENYQALAEKYEMLKWQRVSLSLLVI 475
           +S +  + TE +  F   D +  E E KR +     + Q L E+   L  +  SL L+++
Sbjct: 383 DSSIAHQTTELKVKF---DTSWIESENKRLI-----DNQKLKEQELTLLEKNKSLQLIIL 434

Query: 476 VF-ALILPIAHYRRRKECDQNQQDSLHGVLSRTSGLERLTHIEACQQTEHVHLLAL---- 530
           +    IL        K+  +N+Q     +    + L    HI A  Q E    LAL    
Sbjct: 435 LLTGCILATVSLFAYKQVHRNRQLQTIALTDYLTQLPNRRHIYA--QAEQYFQLALKQQI 492

Query: 531 ------LDIDQLRQFNERHGYERGDIALQNTINTLLHQLRAKEFVCRLGDDEFLVVMPNC 584
                  D D  ++ N+  G+E GD AL             +  V R+G +EFL+++PN 
Sbjct: 493 PFSIIIFDADHFKKINDNFGHEIGDQALLTIAEASKTLTTDRNLVGRIGGEEFLILLPN- 551

Query: 585 RRTLSETRLFVLHHALNG--------KTPTDAKSTVGLSVTLSYLAVESGLASFTHFYPK 636
                  R + L H L            P + K TV   V    +  E    +F     +
Sbjct: 552 ---TDADRAWKLAHELQTLITRFGAINLPVELKLTVSAGVATLPIQSELQDQNFARLLKR 608

Query: 637 LDSALSIAKQSGNGGLIDAADPT 659
            D+AL  AK +G    + AA+ T
Sbjct: 609 ADNALYEAKNAGR-NCVKAAEIT 630