Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  403 bits (1035), Expect = e-117
 Identities = 200/342 (58%), Positives = 255/342 (74%), Gaps = 3/342 (0%)

Query: 4   KLTVLASVVAASSAMLSLSASA-AESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGI 62
           KL      V  ++A+L +S  A A +TLD V  +GF+ CGVS GLPGFS P++ G+  GI
Sbjct: 2   KLLKSTLAVMTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVGI 61

Query: 63  DVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFV 122
           D ++C+A+AAAV GD TKVKF  L AKERFTALQSGEID+LSRN+T T  RD+ +GL F 
Sbjct: 62  DADFCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKFP 121

Query: 123 G-VNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDT 181
           G + YYDG GF+    LGVKSAKEL+GA++C+Q+GTTTELN++DYFR +G+ Y P+ FDT
Sbjct: 122 GFITYYDGIGFLANNKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFDT 181

Query: 182 AAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWF 241
           + +++K  ++GRCDVLT+D+S L+A R  L  P   VVLPE ISKEPLGPVVR  DD+W 
Sbjct: 182 SDESAKSLESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEWL 241

Query: 242 NVAKWVLYAMVNAEEYGITSKNVDEMMKS-DNPEVKRILGLDGPKGTGLGIRDDWSYQIV 300
            + +W  YA++NAEE G+TSKNV+   KS  NP+V R+LG DG  G  L +  DW  QIV
Sbjct: 242 AIVRWTGYALLNAEEAGVTSKNVEAEAKSTKNPDVARMLGADGEYGKDLKLPKDWVVQIV 301

Query: 301 KQVGNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR 342
           KQVGNYGE F+R +G G+PL+IDRG+NALWNAGG  YAPP+R
Sbjct: 302 KQVGNYGEMFERNLGKGTPLEIDRGLNALWNAGGIQYAPPVR 343