Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., Lysine-arginine-ornithine-binding periplasmic protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  469 bits (1207), Expect = e-137
 Identities = 227/334 (67%), Positives = 268/334 (80%), Gaps = 7/334 (2%)

Query: 9   ASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQ 68
           A V+A+ SAM       A STLD V S+G +TCGV+ GLPGF+ P+ KG W GIDV+ C+
Sbjct: 14  AGVIASGSAM-------AASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGIDVDICR 66

Query: 69  AMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYD 128
           A+AAAV GD  KVKFVPL AKERFTALQSGEIDVLSRNTTWT  RD++LGL F GVNYYD
Sbjct: 67  AVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFAGVNYYD 126

Query: 129 GQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAAQTSKG 188
           GQGFMVKK+LGV SAKELNGAS+C+QSGTTTELNLADYFR + MTY PVVFDT+ QT +G
Sbjct: 127 GQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTSDQTVQG 186

Query: 189 FDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWFNVAKWVL 248
           F  GRCDVLT+DQS LYALR+ LE P SA+VLPE+ISKEPLGP+VRQ DD+W N+ +W L
Sbjct: 187 FAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLNIVRWSL 246

Query: 249 YAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYGE 308
           +A +NAEE G+TS N DE+    +  VKR+LG +G  G  LG+ +DW+Y IVKQVGNYGE
Sbjct: 247 FAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQVGNYGE 306

Query: 309 SFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR 342
            F+R +G GSPL+I+RG+NALWN GG  YAPPIR
Sbjct: 307 MFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR 340