Pairwise Alignments

Query, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 90.1 bits (222), Expect = 6e-23
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 11  VVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLP--GFSNPNAKGEWEGIDVEYCQ 68
           ++A +  ++  +A A    LD++  +G + CGV   +   GF +  +K +  G DV+ CQ
Sbjct: 6   LLALTLGLVLTAAVAHAGKLDEIKQRGTLVCGVKDSVVPFGFIDETSK-QLVGFDVDICQ 64

Query: 69  AMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYD 128
            +A    G K +VK V  T+  R   L  G +D+++   T   +RD  +  +   + Y+D
Sbjct: 65  FIADRA-GVKLEVKTV--TSATRIPMLTQGSVDLVAATMTHKFERDDVIDFS---ITYFD 118

Query: 129 -GQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAAQTSK 187
            GQ  +VKK  G+KSA +L G  V    G+T+E N+    + +      V FD   Q   
Sbjct: 119 AGQRLLVKKGGGIKSAADLKGKKVATVKGSTSEKNM----KAAQPDCVVVSFDEYPQAFL 174

Query: 188 GFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW 240
               G+ + +TTD+  L  L+ +  +PD   ++ + I+ EP G  + ++D K+
Sbjct: 175 ALKQGKAEAVTTDEPILVGLKNSDPEPDKWDIVGDFIASEPYGLGLVENDSKF 227