Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter for D-Alanine, permease component 2 (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  399 bits (1025), Expect = e-116
 Identities = 203/374 (54%), Positives = 270/374 (72%)

Query: 28  RSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYDETYS 87
           R+ VFQ++ V  +    + + +N  TNL+ RGI +GF FLE++AGFGI+Q LI Y E  S
Sbjct: 2   RAWVFQVVTVVAVIALGWFLFDNTQTNLQHRGITSGFGFLERSAGFGIAQHLIDYTEADS 61

Query: 88  YGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQ 147
           Y R FL+GLLNT LV+ +G++LATILGF+IG+ARLS NW+IS+LA VY+E FRN+P LLQ
Sbjct: 62  YARVFLIGLLNTLLVTFIGVILATILGFIIGVARLSQNWIISKLATVYVEVFRNIPPLLQ 121

Query: 148 IFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVL 207
           I FWYF V  ++P  R + + G+ F+++ +GL +   +   G    +++++  I+A  ++
Sbjct: 122 ILFWYFAVFLSMPGPRAAHNFGDTFFVSSRGLNMPAALVAEGFWPFVISVVLAIVAIVLM 181

Query: 208 SIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQGGISVLP 267
           + WA  R   TG+        L L +  P L   L G P+  E P L+GFNF GG  ++P
Sbjct: 182 TRWANKRFEATGEPFHKFWVGLALFLVIPALSALLFGAPVHWEMPELKGFNFVGGWVLIP 241

Query: 268 ELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQALRIII 327
           EL AL +ALT+YTA+FIAEIVRSGI +VSHGQTEAA SLGL    TL+ VIIPQALR+II
Sbjct: 242 ELLALTLALTVYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRNGPTLRKVIIPQALRVII 301

Query: 328 PPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSA 387
           PPLTSQYLNL KNSSLA  IGYP++VS+FAGT LNQTGQAIE+I++TM VYL +S+  S 
Sbjct: 302 PPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAISISISL 361

Query: 388 LMNLYNRKVALVER 401
           LMN YN+++AL+ER
Sbjct: 362 LMNWYNKRIALIER 375