Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  395 bits (1015), Expect = e-114
 Identities = 206/378 (54%), Positives = 270/378 (71%)

Query: 24  NPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYD 83
           +P  R+ VFQ+LAV  +  F + + +N  TNL  RGI +GF FL   AGFGISQ LI Y 
Sbjct: 17  DPRIRAWVFQVLAVLAVVAFGWYLFHNTQTNLAHRGITSGFGFLNNAAGFGISQHLIDYS 76

Query: 84  ETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLP 143
           E+ +YGR F VGLLNT LVSV+GI LAT++GF++G+ RLSSNWLI +LA +YIE FRN+P
Sbjct: 77  ESDTYGRVFWVGLLNTLLVSVIGIFLATVMGFILGVGRLSSNWLIRQLATLYIEIFRNIP 136

Query: 144 LLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIA 203
            LL IFF YF V+  LP  R S+ L +  ++N +G+ +  P    G     +AL+  ++A
Sbjct: 137 PLLLIFFVYFAVISPLPGPRNSLSLWDVVFVNNRGVQMPAPSAGDGFWAFWLALLVALVA 196

Query: 204 CWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQGGI 263
             VL+ WA  R+  TG+  P+      L +  P L+ F+ G P T E P L+ FN +GG 
Sbjct: 197 VVVLNRWARARRHATGRMFPVFWTSPGLFLAIPWLMTFIAGAPFTWEVPELQRFNIRGGW 256

Query: 264 SVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQAL 323
            V+PEL +++VAL++YTA+FI E VRSGI +VSHGQTEAA SLGL   + L+LVI+PQAL
Sbjct: 257 VVIPELVSIVVALSVYTAAFIGETVRSGIQSVSHGQTEAAASLGLRPGQVLRLVIVPQAL 316

Query: 324 RIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSL 383
           R+I+PPLTSQYLNL KNSSLA AIGYPD+VS+FAGT LNQTGQAIE +++TM VYL +S+
Sbjct: 317 RVIVPPLTSQYLNLAKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETMAITMSVYLAISI 376

Query: 384 LTSALMNLYNRKVALVER 401
             S LMN YN+++AL+ER
Sbjct: 377 SISLLMNWYNKRIALIER 394