Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., ABC-type permease for basic amino acids and glutamine from Synechococcus elongatus PCC 7942

 Score =  252 bits (643), Expect = 1e-71
 Identities = 150/361 (41%), Positives = 217/361 (60%), Gaps = 17/361 (4%)

Query: 31  VFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIPYDETYSYGR 90
           V+QLL + V+      +V+N + NL  RG++  F +L+Q+AGF I +S I Y    SY R
Sbjct: 21  VWQLLVLLVVGLGAIWLVDNLVYNLSQRGLSLSFDWLDQSAGFNIGESAIAYRTADSYAR 80

Query: 91  TFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFF 150
             +VGL+N+  V  +G++L T++G L G+A  S NWL+ +L+  Y+   RN PLLLQ+  
Sbjct: 81  ALVVGLVNSLRVIAIGLILTTVIGTLAGVAAFSENWLLRQLSRGYVAVVRNTPLLLQLIV 140

Query: 151 WYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIW 210
           WYF +L +LP+A++  H     YL+ +G+YL  P       W++V L    IA  +   W
Sbjct: 141 WYFPILLSLPAAQQPWHWLGSLYLSKQGIYLPWPQTPG---WLVVIL---AIALVLFVSW 194

Query: 211 ATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYP-VLRGFNFQGGISVLPEL 269
              RQR     +P     L   +   V V  LL Q     +P  L+    +GG+ +  E 
Sbjct: 195 LAQRQR-----SPRDWRWLYGAIAV-VTVLMLLTQ---LSWPQQLQPGQIRGGLRLSLEF 245

Query: 270 AALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQALRIIIPP 329
            ALL+ L  YT +FI EI+R GI +V  GQ EAA +LGLTR++TL  +++PQALR+I+P 
Sbjct: 246 TALLLGLVAYTGAFITEIIRGGILSVPAGQWEAAAALGLTRSQTLWQIVVPQALRVIVPS 305

Query: 330 LTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALM 389
           L SQY+   KNSSLA+A+GYPDL +  A TTLNQTG+ +E+  + ML YL ++ + SA M
Sbjct: 306 LNSQYVGFAKNSSLAIAVGYPDLYAT-AQTTLNQTGRPVEVFLILMLTYLAINAVISAGM 364

Query: 390 N 390
           N
Sbjct: 365 N 365