Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  460 bits (1184), Expect = e-134
 Identities = 229/380 (60%), Positives = 288/380 (75%)

Query: 22  LYNPTFRSVVFQLLAVCVLAFFLYTIVNNALTNLESRGIATGFAFLEQTAGFGISQSLIP 81
           L +P  R++ FQ+L +  L +F + I +N LTN+ +RGI TGFAFL+ +AGFGI  SLIP
Sbjct: 19  LRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTGFAFLDHSAGFGILMSLIP 78

Query: 82  YDETYSYGRTFLVGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRN 141
           YDETYSYGRTF+VGLLNT LVS LG++ AT++GF++G+ARLS NWLI++LA +Y+ET RN
Sbjct: 79  YDETYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLSRNWLIAKLALIYVETLRN 138

Query: 142 LPLLLQIFFWYFVVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGI 201
           +PLLLQIFFWYF VL+ LP  R+S+ LG  F+LN +G Y+  PI   G   V +AL+  +
Sbjct: 139 IPLLLQIFFWYFAVLRPLPQPRQSLELGALFFLNNRGFYMPSPIAGDGMALVGLALVVAL 198

Query: 202 IACWVLSIWATNRQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQG 261
                +  WAT R+  TG   P  R  L L +  P+L +  LG P+T + P L+GFNF G
Sbjct: 199 ALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLALGTPVTFDVPHLQGFNFVG 258

Query: 262 GISVLPELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQ 321
           G  ++PE+ ALL+AL++YTA+FIAEIVRSGI AVSHGQTEAA SLGL  T TL+L+++PQ
Sbjct: 259 GSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAAHSLGLKPTATLRLIVLPQ 318

Query: 322 ALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTL 381
           ALR++IPP TSQYLNL KNSSLA AIGYPDLVSVF GTTLNQTGQA+EI+ MTM VYL +
Sbjct: 319 ALRVMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQTGQAVEIVGMTMAVYLLI 378

Query: 382 SLLTSALMNLYNRKVALVER 401
           SL+ S LMN YNR VAL ER
Sbjct: 379 SLVVSGLMNWYNRAVALKER 398