Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  288 bits (738), Expect = 1e-82
 Identities = 167/365 (45%), Positives = 229/365 (62%), Gaps = 4/365 (1%)

Query: 35  LAVCVLAFFLYTIVN-NALTNLESRGIATGFAFLEQTAGFGISQSLIPYDETYSYGRTFL 93
           LAV +  F L++++  N + NL   GI  GF +L+  A F I +SL+ Y    SY R   
Sbjct: 24  LAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHPANFEIGESLVAYTSGDSYARALG 83

Query: 94  VGLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYF 153
           VG+LNTALVS++G LLAT+LG  +GI RLS+N LISR   +Y+E  RN PLLLQ+FFW  
Sbjct: 84  VGILNTALVSIIGCLLATLLGVALGIGRLSANLLISRAVQLYVEVIRNTPLLLQLFFWS- 142

Query: 154 VVLQALPSARESMHLGEWFYLNIKGLYLAKPIFESGSIWVLVALIAGIIACWVLSIWATN 213
             + ALP  R++       +L  +GLY+     +  +++ L+ L  G +A  V+ I    
Sbjct: 143 ATIHALPGPRQAFEPLTGVFLTNRGLYMPALAMDGAAVFSLLLLGGGALA-GVVRILVHE 201

Query: 214 RQRLTGQQTPMGRYILLLCVTFPVLVYFLLGQPITAEYPVLRGFNFQGGISVLPELAALL 273
           R+    ++      +  + V    ++   LG  ++ E P L GFN  GG  + PE  ALL
Sbjct: 202 RRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPPRLGGFNITGGWVLSPEFLALL 261

Query: 274 VALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQALRIIIPPLTSQ 333
           V L I  ++ I EIVRSGI AV  GQ EAA SLGLTR +TL+LV++PQALR++IP +TS 
Sbjct: 262 VGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGRTLRLVVLPQALRVVIPLMTSS 321

Query: 334 YLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSALMNLYN 393
           YL+LTKNSSLA+AIG+PDLVSV   T+ NQTG   E I++ M VYLT+SL  SA +N YN
Sbjct: 322 YLSLTKNSSLAVAIGFPDLVSV-VNTSANQTGHVFEAIALMMAVYLTISLTVSAALNFYN 380

Query: 394 RKVAL 398
            +++L
Sbjct: 381 HRLSL 385