Pairwise Alignments

Query, 401 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  109 bits (272), Expect = 9e-29
 Identities = 59/126 (46%), Positives = 85/126 (67%), Gaps = 1/126 (0%)

Query: 268 ELAALLVALTIYTASFIAEIVRSGINAVSHGQTEAAMSLGLTRTKTLKLVIIPQALRIII 327
           E AA +++LT+YTA+FIAE +RSGI ++   Q EA+ + GL+  + +  V++PQA RII+
Sbjct: 100 EFAAGVISLTVYTAAFIAEEIRSGIFSIPRTQLEASRACGLSFMQAMSYVVLPQAFRIIV 159

Query: 328 PPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEIISMTMLVYLTLSLLTSA 387
           PPL SQ LNL KNSSL M IG  +L +  A    + T    E  +++ L+YL +SL+ S 
Sbjct: 160 PPLISQALNLFKNSSLCMTIGVMEL-TYMARQIESYTFHGFEAFTVSTLIYLCISLMVSL 218

Query: 388 LMNLYN 393
           L+NLYN
Sbjct: 219 LINLYN 224



 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 95  GLLNTALVSVLGILLATILGFLIGIARLSSNWLISRLAAVYIETFRNLPLLLQIFFWYFV 154
           G++ T  +S L ++LA +LG LI + RLS        +  + E FRN PLL+QIFFWYF 
Sbjct: 22  GVITTCQLSGLSLVLAMLLGTLIAVMRLSGVRPFVWFSVAFTEFFRNTPLLVQIFFWYFG 81

Query: 155 VLQALPSARESMHLGEWFY 173
               LP A     + +W Y
Sbjct: 82  SDAVLPDA-----VNQWLY 95