Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  436 bits (1121), Expect = e-127
 Identities = 214/364 (58%), Positives = 265/364 (72%)

Query: 1   MATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNAN 60
           M  H F+P LPPP+ + G +GWLR NLF+   N++ TLV  YL    +  +L+WAIF A+
Sbjct: 1   MTIHTFKPDLPPPTISIGALGWLRANLFSSWINTLLTLVGLYLLWLIVPPVLEWAIFKAD 60

Query: 61  WSGTTRNDCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPK 120
           W+G TR DC+ EGACWVFI  R+ QFMYGFYP    WR     +   +  A L   + P 
Sbjct: 61  WTGETRADCSREGACWVFIQTRFGQFMYGFYPTELRWRVDAAAWLAIIGAAPLFLRQMPH 120

Query: 121 RGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALA 180
           +    + ++ +YP  A  LL+GG  GL+ V T +WGGL++T++IA VGI  +LP+G+ LA
Sbjct: 121 KLRYGIGYLLVYPLLAYWLLHGGFLGLQTVPTSQWGGLMLTVVIAAVGIAGALPLGILLA 180

Query: 181 LGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF 240
           LGRRSDMP IR LC  +IE WRGVPLITVLFM+SVMLPLFL +G  +DKLLRA++ VV F
Sbjct: 181 LGRRSDMPAIRVLCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMNLDKLLRAMLMVVFF 240

Query: 241 SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFK 300
            AAY+AEV+RGGLQAIPKGQYEAA A+GL YW+   L+ILPQALK+ IP IVNTFI LFK
Sbjct: 241 EAAYIAEVVRGGLQAIPKGQYEAAAAMGLGYWRSTLLVILPQALKLVIPGIVNTFIALFK 300

Query: 301 DTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLH 360
           DTSLV+IIG+FD L   + A  DP WLG +TE YVF ALV+W+FCFGMSRYS+ LE KL 
Sbjct: 301 DTSLVIIIGLFDFLNSIKRATADPAWLGMSTEGYVFAALVYWMFCFGMSRYSMRLERKLD 360

Query: 361 TGHK 364
           TGHK
Sbjct: 361 TGHK 364