Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine from Synechococcus elongatus PCC 7942

 Score =  239 bits (611), Expect = 7e-68
 Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 38/378 (10%)

Query: 20  VGWLRKNLFNGVFNSIATLVLGYLAIQ--GLLNIL------------DWAIFNAN----- 60
           + WLR+NLF+   NS  TL+L  + +   G L +             +W +F        
Sbjct: 15  IAWLRQNLFSSWLNSAITLLLVVIIVTVVGRLGLWITTEARWTVLVDNWTLFFVGRYPAA 74

Query: 61  -------WSGTTRNDCTLEGACWVFISVRWEQ-FMYGFYPAAEL-------WRP-RLFFF 104
                  W G       L   C    S RW++  ++G+   A         W P +L   
Sbjct: 75  EQWRLWLWLGLLSPTLGLTWGCLATGSHRWQRRSLWGWAGLAAAIAGIPLPWFPHKLGLA 134

Query: 105 TLALFVALLAYEKTPKRGWIWLVFVNIY---PFFAALLLYGGVFGLEVVETHKWGGLLVT 161
            +A  V   ++     RG  WL F+       F   L L  G  GL  V ++ W GLL+T
Sbjct: 135 AIAATVPAASWLAQRCRGQAWLRFLPTLWGVLFLVGLWLLQGGLGLRPVSSNDWSGLLLT 194

Query: 162 LIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFL 221
           L  AL+ ++ SLP+G+ LALGR+S +P IR L   YIE++RG+PL+T+LF   VM+PL L
Sbjct: 195 LATALISMVCSLPLGILLALGRQSSLPAIRWLSVTYIELFRGLPLVTILFFGQVMVPLML 254

Query: 222 SQGSEIDKLLRALIGVVMFSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILP 281
                ID++LRA++G+ +F +AY+AE +RGGLQAIP+GQ+EAA ALGL+ ++    I+LP
Sbjct: 255 DSEWRIDRILRAIVGLTIFLSAYLAETVRGGLQAIPQGQFEAAAALGLNLFQTYRFIVLP 314

Query: 282 QALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVF 341
           QAL+I+IP+IV  F+ L +DT+L+ I+G+ ++LGI +S   +P +LG   E Y+F+ +++
Sbjct: 315 QALRISIPAIVGLFLNLLQDTTLLSIVGLLELLGISRSILANPAYLGRYAEVYLFLGVLY 374

Query: 342 WIFCFGMSRYSIWLEGKL 359
           W+ C+G+++ S  LE +L
Sbjct: 375 WLCCYGLAQLSRRLEQRL 392