Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  412 bits (1059), Expect = e-120
 Identities = 203/365 (55%), Positives = 257/365 (70%)

Query: 1   MATHQFQPSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNAN 60
           MA    + +LPPP  TTG + W+R+NL +  FN   T +  ++ + G  +++ WAI +A 
Sbjct: 1   MAVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDAT 60

Query: 61  WSGTTRNDCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPK 120
           + G  ++ C+  GACW FI  R + F YGFYPAAE WR  L F  LA+ +          
Sbjct: 61  FIGEGQDACSNGGACWAFIINRLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSG 120

Query: 121 RGWIWLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALA 180
           R  + L  +   P    +LL GGVFGL  V+T +WGGL++TL++A VGI+A+LP+G+ LA
Sbjct: 121 RRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLMLTLVLAYVGIVAALPLGMVLA 180

Query: 181 LGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF 240
           LGRRS MP++R  CT +IE+WRGVPLI+VLFMASVMLPLFL  G   DKLLRALIG+ +F
Sbjct: 181 LGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLF 240

Query: 241 SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFK 300
            +AYMAEVIRGGLQAIP+GQ+EAA ALGL +W+  GLIILPQALK+ IP +VNTFI LFK
Sbjct: 241 QSAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFK 300

Query: 301 DTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLH 360
           DT+LVLIIG+ D+LG  QSA  DP W   A E Y+F    FWIFCFGMSRYS  LE KLH
Sbjct: 301 DTTLVLIIGLLDILGTVQSAIVDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLH 360

Query: 361 TGHKR 365
           TGH++
Sbjct: 361 TGHRK 365