Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  268 bits (684), Expect = 2e-76
 Identities = 152/358 (42%), Positives = 215/358 (60%), Gaps = 7/358 (1%)

Query: 8   PSLPPPSNTTGVVGWLR--KNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTT 65
           P+ P  +  T + GW R  + LF  + N++ TL++  +    +  ++ WA+ +A WSG  
Sbjct: 11  PAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWAVIDAVWSGPA 70

Query: 66  RNDCTLEGACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKR-GWI 124
                  GACW F++ +    ++G YPAA    P L    L    ALL     P+  G  
Sbjct: 71  EACAARSGACWAFLAEKTRFILFGLYPAAAQGAPALASLLLG---ALLVASGLPRLWGRN 127

Query: 125 WLVFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALALGRR 184
            LV   + P  A L++ G   GL V  T +WGGL +TL++  V +  + P+ V LAL RR
Sbjct: 128 LLVAWILVPLLAVLVMAGVFSGLRV-GTDQWGGLPLTLLLTTVAMGGAFPLAVVLALARR 186

Query: 185 SDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMFSAAY 244
           S   + R +    IE  RGVPLITVL+ A +++PL L  G+ IDKLLRA   +++F+A+Y
Sbjct: 187 SRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAILLFTASY 246

Query: 245 MAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKITIPSIVNTFIGLFKDTSL 304
           +AE+IR GLQAIP GQYEAA +LGL Y   M L++LPQAL++ IPSIV   IG+ +DT+L
Sbjct: 247 LAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGILQDTTL 306

Query: 305 VLIIGMFDVLGIGQSANTDPNWLGFATESYVFVALVFWIFCFGMSRYSIWLEGKLHTG 362
           V +IG+ D+L   + A TDP+WLGF TE +  VA +++  CF  SRYS+WLE  L  G
Sbjct: 307 VAVIGIHDLLSASKLAATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERYLARG 364