Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., amino acid ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  268 bits (684), Expect = 3e-76
 Identities = 146/267 (54%), Positives = 186/267 (69%), Gaps = 11/267 (4%)

Query: 107 ALFVALLAYEKTPKR-GWIWL-----VFVNIYPFFAALLLYGGVFGLEVVETHKWGGLLV 160
           A+ V  L +  T  R GW  L     +F  I    AAL L  G  GL VV+T  WGGLLV
Sbjct: 237 AVVVTALVFVLTGVRNGWRALATTVGMFAGIAVMVAALRLDRG--GLPVVDTRMWGGLLV 294

Query: 161 TLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLF 220
           TL++++ GI+AS+PIG+ALALGRRS +P+IR     +IE WRGVPLITV+F A+ MLPLF
Sbjct: 295 TLVVSVTGIVASMPIGIALALGRRSTIPLIRIFSVAFIEFWRGVPLITVMFFATYMLPLF 354

Query: 221 LSQGSEIDKLLRALIGVVMFSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIIL 280
           L     ID L+R LIG+ +F+ AY AEVIRGGL AIP+GQ EAA ALGLSYWK  GLI+L
Sbjct: 355 LPGNFTIDNLMRVLIGIALFAGAYNAEVIRGGLNAIPRGQAEAASALGLSYWKITGLIVL 414

Query: 281 PQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSANTDPNWLGFAT--ESYVFVA 338
           PQAL+  IP +VN+FI LFKDTSLV I+ +FD+LG  ++A  DP W    T    + F  
Sbjct: 415 PQALRHVIPGLVNSFIALFKDTSLVSIVALFDLLGQLRAAFADPTWSTPTTLFTGFAFTG 474

Query: 339 LVFWIFCFGMSRYSIWLEGKLHTGHKR 365
           L++++FCFGMSRYS+ +E +L+  H+R
Sbjct: 475 LIYFVFCFGMSRYSLSVEHRLN-AHRR 500



 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 90/320 (28%), Positives = 145/320 (45%), Gaps = 37/320 (11%)

Query: 8   PSLPPPSNTTGVVGWLRKNLFNGVFNSIATLVLGYLAIQGLLNILDWAIFNANWSGTTRN 67
           P  PPP +T GV+G +R+ L N   N + T+V   L    ++  + + + +A WSG+ R 
Sbjct: 18  PQRPPPVHTPGVLGLVRQRLLNSPTNILLTIVGLLLLYFTVVPTVKFLLVDAVWSGSNRT 77

Query: 68  DCTLE------GACWVFISVRWEQFMYGFYPAAELWRPRLFFFTLALFVALLAYEKTPKR 121
           DC  +      GACW F+  ++ QF+YGFYP  E WR  L F   AL +  L   + P +
Sbjct: 78  DCLADKAGHPVGACWPFVQAKFSQFIYGFYPTPERWRVDLVFALGALLLLPLLIPRAPAK 137

Query: 122 GWIWLVFVNIYPFFAALLLY-GGVFGLEVVETHKWGGLLVTLIIALVGIIASLPIGVALA 180
                +F   +P  A  LL+ GGV G  V     W   L++ +   VG  A   +    A
Sbjct: 138 TLNAGLFFIAFPVLAFFLLHGGGVQGFGVT----WSADLLSGVADSVG-RAGRKLAAGGA 192

Query: 181 LGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASVMLPLFLSQGSEIDKLLRALIGVVMF 240
           +G      ++  L TV   VW   PL+T+            SQ   +D L+ A   VV+ 
Sbjct: 193 IGSVIGQ-VLLGLGTVL--VWLSWPLVTLRDWIQAS-----SQPVWLDLLITA---VVVT 241

Query: 241 SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKMGLIILPQALKIT---IPSIVNTFIG 297
           +  ++   +R G +A+       A  +G+      G+ ++  AL++    +P +     G
Sbjct: 242 ALVFVLTGVRNGWRAL-------ATTVGMF----AGIAVMVAALRLDRGGLPVVDTRMWG 290

Query: 298 LFKDTSLVLIIGMFDVLGIG 317
               T +V + G+   + IG
Sbjct: 291 GLLVTLVVSVTGIVASMPIG 310