Pairwise Alignments

Query, 397 a.a., ribosomal RNA large subunit methyltransferase I from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., LSU m5C1962 methyltransferase RlmI from Pseudomonas fluorescens FW300-N2E2

 Score =  226 bits (575), Expect = 1e-63
 Identities = 143/400 (35%), Positives = 213/400 (53%), Gaps = 13/400 (3%)

Query: 3   PAIYLVKGRDKSLRRKHPWVFSRGISKVEGTP----KLGETVDVYSFEGKWLAKAAYSPH 58
           P++ L    D+ LR  H WV+S  I  V  TP    K G+   + +  GK L   A SP+
Sbjct: 4   PSLRLKANADRRLRAGHLWVYSNEID-VAATPLHGFKAGDQAILEAAGGKPLGIVAMSPN 62

Query: 59  SQITARVWSFEQE-PIDRDFFIKRIEQAQLLRNDIIERDGLTGYRLIAAESDGLPGITID 117
           + I AR+ S + + P+D+   + R+  A  LR  + ++     YRL+  +SD LPG+ +D
Sbjct: 63  NLICARLLSRDVKLPLDKSLLVHRLNVALSLRERLFDKPF---YRLVYGDSDLLPGLVVD 119

Query: 118 KYQDYLVCQLLSAGAEYQKQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGEL 177
           ++ D LV Q+ SA  E  K  ++ AL        I  ++D A R  EGL+  V  + G L
Sbjct: 120 RFGDILVVQIASATMEAHKDDVIAALTQVLKPSGILFKNDSAARDAEGLNRYVETVFG-L 178

Query: 178 PPKSVVIEENGVKISVDIVGGHKTGFYLDQRDSRFQSMKYVKEKEVLNCFSYTGGFGLYA 237
            P+ V +EENGVK    ++ G KTG++ D R +R +   Y K K VL+ FSY GG+G+ A
Sbjct: 179 VPEWVALEENGVKFEAPVMEGQKTGWFYDHRMNRARLAPYAKGKRVLDLFSYIGGWGVQA 238

Query: 238 LKGGAKRVINADVSQPALDTAKFNAELNGFDISKKRAVFLNADVFKLLREYRDQGTRFDV 297
              GA  V   D S  ALD  + NA LNGF    ++   +  DVF+ L+E +    RFDV
Sbjct: 239 AAFGASEVFCVDASAFALDGVERNAALNGF---AEKLTCIEGDVFEALKELKASEERFDV 295

Query: 298 VVMDPPKFAESKAQLDGACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADA 357
           +V DPP F + K  L      Y+ +N  AM++L+  G L++ SCS  + +   Q I+  +
Sbjct: 296 IVADPPAFIKRKKDLKNGEGAYRRLNEQAMRLLSKDGILVSASCSMHLPEDDLQNILLTS 355

Query: 358 ALDAGRDVKFVERFEQAADHPTDTAYPEGFYLKGFACKVL 397
           A    R+++ +ER  Q  DHP   A  E  Y+K   C++L
Sbjct: 356 ARHLDRNIQLLERGGQGPDHPVHPAIAETRYIKSITCRLL 395