Pairwise Alignments

Query, 397 a.a., ribosomal RNA large subunit methyltransferase I from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

 Score =  167 bits (423), Expect = 5e-46
 Identities = 125/381 (32%), Positives = 193/381 (50%), Gaps = 22/381 (5%)

Query: 13  KSLRRKHPWVFSRGISKVEGTPKLGETVDVYSFEGKWLAKAAYSPHSQITARVWSFEQEP 72
           +SL+     ++   I   +   K  E VD+ ++ G ++AKA Y P   +  ++ + E E 
Sbjct: 11  QSLKNFSNIIYKNAIVNKDDFSKTEEIVDI-TYNGNFVAKALYDPKFPLI-KILTRENEE 68

Query: 73  IDRDFFIKRIEQAQLLRNDIIERDGLTGYRLIAAESDGLPGITIDKYQDYLVCQLLSAGA 132
           ID+DFF KRI  A   R DI+       YR+I AE+D LP I +DKY      Q+ S   
Sbjct: 69  IDKDFFFKRINNANNYRTDILNYKDT--YRMIYAEADYLPSIILDKYNKIASIQISSKIM 126

Query: 133 EYQKQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGELPPKSVVIEENGVKIS 192
           +     + E +        +Y +S      K+G D +  +  G+      VI E   K +
Sbjct: 127 DNYSDLIFECISEITDVETMYVQSG-----KKGSDVKTKIF-GDKSQIETVISEGNAKFN 180

Query: 193 VDIVGGHKTGFYLDQRDSRFQSMKYVKEKE-VLNCFSYTGGFGLYA-LKGGAKRVINADV 250
           V++ G HKTGF+LDQRD+R     YVK  + VL+  SYTGGF ++A +KGG   V   D+
Sbjct: 181 VNMKG-HKTGFFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG--EVTAVDL 237

Query: 251 SQPALDTAKFNAELNGFDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKA 310
           S+ AL  A+ N ELN      K    + ++ F  ++E      +FDVVV+DPP F +S  
Sbjct: 238 SEKALAVAEENMELNRV----KNYNCMVSNAFDAMKEMIKNNEKFDVVVLDPPAFTDSSK 293

Query: 311 QLDGACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADAALDAGRDVKFVER 370
            +  A   Y  +N L +++      L+T SCS  +D+  F+  I  ++L A ++++ +  
Sbjct: 294 DIKNALNAYNSMNYLGLKLAK--RILVTCSCSHHIDRESFKHTIVSSSLRAKKEIRQIGS 351

Query: 371 FE-QAADHPTDTAYPEGFYLK 390
           +  QA DH    A  +  YLK
Sbjct: 352 YRTQAPDHIITMANKDLEYLK 372