Pairwise Alignments

Query, 397 a.a., ribosomal RNA large subunit methyltransferase I from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis JJ

 Score =  168 bits (426), Expect = 2e-46
 Identities = 126/381 (33%), Positives = 195/381 (51%), Gaps = 22/381 (5%)

Query: 13  KSLRRKHPWVFSRGISKVEGTPKLGETVDVYSFEGKWLAKAAYSPHSQITARVWSFEQEP 72
           +SL+     ++ + I   +   K  E VD+ S+ G ++AKA Y P   +  ++ + + E 
Sbjct: 11  QSLKNFSNIIYKKAIVNKDDFSKNEEIVDI-SYNGNFVAKALYDPKFPLI-KILTRKNEE 68

Query: 73  IDRDFFIKRIEQAQLLRNDIIERDGLTGYRLIAAESDGLPGITIDKYQDYLVCQLLSAGA 132
           ID+DFF KRI  A   R DI+       YR+I AE+D LP I +DKY      Q+ S   
Sbjct: 69  IDKDFFFKRINNANNYRTDILNYKDT--YRMIYAEADYLPSIILDKYNKIASIQISSNIM 126

Query: 133 EYQKQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGELPPKSVVIEENGVKIS 192
           +     + E +        +Y +S      K+G D +  +  G+      VI E   K +
Sbjct: 127 DNYSDLIFECISEITDVETMYVQSG-----KKGSDVKTKIF-GDKSQIETVISEGNAKFN 180

Query: 193 VDIVGGHKTGFYLDQRDSRFQSMKYVKEKE-VLNCFSYTGGFGLYA-LKGGAKRVINADV 250
           V++ G HKTGF+LDQRD+R     YVK  + VL+  SYTGGF ++A +KGG   V   D+
Sbjct: 181 VNMKG-HKTGFFLDQRDNRADLENYVKPGDKVLDICSYTGGFAVHAGIKGG--EVTAVDL 237

Query: 251 SQPALDTAKFNAELNGFDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKA 310
           S  AL  A+ N ELNG  +     +  NA  F  ++E      +FDVVV+DPP F +S  
Sbjct: 238 SDKALAVAEENMELNG--VKNYNCIVSNA--FDAMKEMIGNNEKFDVVVLDPPAFTDSSK 293

Query: 311 QLDGACRGYKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADAALDAGRDVKFVER 370
            +  A   Y  +N L +++      L+T SCS  +D+  F+  I  +++ A ++++ +  
Sbjct: 294 DIKNALNAYNSMNYLGLKLAK--RILVTCSCSHHIDRENFKNTIVSSSIRAKKEIRQIGS 351

Query: 371 FE-QAADHPTDTAYPEGFYLK 390
           +  QA+DH    A  +  YLK
Sbjct: 352 YRTQASDHIITMANRDLEYLK 372