Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1250 a.a., ligand-binding sensor domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  147 bits (372), Expect = 3e-39
 Identities = 187/870 (21%), Positives = 350/870 (40%), Gaps = 167/870 (19%)

Query: 39  ETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGMVDSGTRTL 98
           +T  +  GL  N++N +     GYLW AT  G+ RY+G +F+++ ++       +   + 
Sbjct: 28  QTLEAEHGLSMNTVNDLVTDSRGYLWIATQAGLNRYDGKHFKIYTQSDAPNGPSANDISF 87

Query: 99  LPMDNNG---LLVAGARGSITHRQSYGWQSFRSAPSLVN----GALIDDAQNLWLAIEGL 151
           L +   G   LL   A  ++    +  ++ F +   + N    G   D +  LWLA + L
Sbjct: 88  LHLSAKGELWLLTENAGVNLYQPLTDTFKVFGAEAGIPNVRFTGISEDASGALWLATDKL 147

Query: 152 GVV-VRPYLGN-----------NLYG----------------------------PDRWLL 171
           GV+   P  G            N+ G                            PD+  L
Sbjct: 148 GVLEFSPSAGRVVKTHRIAGSGNVLGITADGRGGFWLAMLGGVSHLTQDGQSRSPDK--L 205

Query: 172 TDASVYRLVKNQHGVIFAATDK-----------------GLYRFNDWQASAMELPIGRYE 214
              SV  +  +  G ++  TD                   L+  +  + +  +L +  Y 
Sbjct: 206 RGLSVSAMTIDPAGNLWLGTDNMELLRYGQDDDSLEDFSNLFPSDITRVAIADLLLDVYS 265

Query: 215 RINYISISLNQELVVATD-QG-VWINTE-----------------EGFQSLFVPLEKEVV 255
             N+   +++   + ATD QG +WI+T                  E   + +  L  + +
Sbjct: 266 HTNHHHNAISSNTIPATDNQGHLWISTSGAGLAELDIGKRRLERYEHSPADYRSLSNQTL 325

Query: 256 TLAEQDRAGNWWIGTVNRGIARLK--NQQLQFLEPSR----GLPYSRVLSWYQDIEGSVW 309
           T    D     WIGT + GIARL   ++QL+ +         L  S + S+++D +G +W
Sbjct: 326 TRLWLDEEQQLWIGTRSAGIARLSLPSRQLRHIHGQSFEKDNLQNSDIRSFFRDSQGQLW 385

Query: 310 VGTNAGIMRLRDAPFININSDKGLVGDYVRTLLPLDDRRVMVGTSRGLSIIEEGLAHSAL 369
           VG+  G++R +++      ++  ++G                            L H   
Sbjct: 386 VGSTGGLLRAKES------AEGEIIGF---------------------------LPHGLP 412

Query: 370 MPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLWQNG-----QLRPVLDENNGLPSSEV 424
           +P++    + +S  + D  G+ +W+GT   GL++         Q R     +  LPS+ +
Sbjct: 413 LPEL--TQAFISFIREDDDGQ-LWIGTRGLGLVIVSKDRQSFRQFRHDPGNSTSLPSNTL 469

Query: 425 RAIVTDPQDNLWIGTSNGIVKRTP--QGVLTTYNKDNSPL-PDDYIMALAVDSEGKLWVG 481
            ++  D Q   WI T +G V R     G  +  ++ NS L P+D +  +A  S+G LW+ 
Sbjct: 470 YSLFRDAQRQFWITTLDGGVARMDVNSGQFSAIDRSNSNLLPEDQVTGMAQSSDGTLWIA 529

Query: 482 S-AVGVAYFDAQGKIRP--VDLTKQEQAQYVFGFYMESD-YVWMATDRGIVRYRLSDASV 537
           +   G+A  + QG+ R    D T    + ++F  +ME +  +W+A+D G++       +V
Sbjct: 530 TYGGGLAMLNTQGQYRHFNTDSTPALPSNHLFSIFMEDNGKLWLASDNGVISLDTQTMAV 589

Query: 538 SLVGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEG 597
             + ++ GL  D  + M+ D+   +W  +  G         L+V D  + ++    F   
Sbjct: 590 DRIDKSKGLIGDVVYLMILDAHHRLWAGTASG---------LSVIDTRTGKVR--SFTRE 638

Query: 598 DGMATSQANGGTNPASASLPNGELLFATAKGVASIKVQRLQQLSELRLPVVLESVSFDSE 657
           DG+  ++ N G   A+    +  L      G   I  + L + +  R P +   +  +  
Sbjct: 639 DGLQDNEFNFG---AAFLDRDNSLYIGGINGFNHIHPEDLPRRAPPRAPSIQSLMLMNQP 695

Query: 658 IINPDQ-QYIAAAGTNRVS-------FGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNT 709
              P   +     GT +++        GY       + +L Y  ++ G D +W       
Sbjct: 696 ADLPQSAKGKGEPGTLKINHTDTLFALGYQSAALTDAHQLSYEYRMLGLDDNWFTDNDLQ 755

Query: 710 QAEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHW--WQRKEVIVMAGMLFLALA 767
           QA +T L+PG Y+F V AR   G  +  T   + I    W  W    + ++     L L 
Sbjct: 756 QATFTGLSPGLYQFEVRARNIDGAQSPITAMGITIEAAPWQTWWAYGLYLLIATCILGLL 815

Query: 768 VSLVMWRIRILKRRELYLVEQVALQTQKLR 797
           + + + +     R ++ L++++A+  Q+L+
Sbjct: 816 LYMKLSKY----RAKMALMDKIAVSEQRLQ 841