Pairwise Alignments
Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1374 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5
Score = 120 bits (301), Expect = 6e-31
Identities = 169/787 (21%), Positives = 313/787 (39%), Gaps = 180/787 (22%)
Query: 136 ALIDDAQNLWLAIE-GL----GVVVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIFAA 190
AL D +W+ E GL G + Y+ N+ G D LT+ + +V++++GV +
Sbjct: 56 ALKDKRGFIWVGTENGLCKFDGYAFKIYV--NITG-DTTSLTNNYINAVVEDKNGVFWVG 112
Query: 191 TDKGLYRFNDWQASAMELPIG-RYERI-----NYISISLNQ--ELVVATDQGVWINTEEG 242
T GL +F+ P+ ++ER N S+S N+ L++ +W+ T++G
Sbjct: 113 TMNGLNKFD---------PVTEKFERFYHKENNRTSLSNNKIWSLLIDRTNKLWVGTDDG 163
Query: 243 FQ---------SLFVP-------LEKEVVTLAEQDRAGNWWIGTVNRGIARLKNQQLQFL 286
F +++ P ++ + V +D+AGN W+G ++G+ + + F
Sbjct: 164 FNLFNKNSNAFTVYQPDFKDPDAIKGKSVNAIAEDKAGNLWLGNWSKGLNKFDKKTKSFK 223
Query: 287 -----EPSRGLPYSRVLSWYQDIEGSVWVGT--NAGIMRLRD-APFININSDKGLVGDYV 338
E + + + + D +G +W+G+ + R + + KG +
Sbjct: 224 NYTQKEVAGEKNPNDIWTLCLDADGMIWIGSYWKGDLFRFDPKSESFTTYASKGTGNASI 283
Query: 339 RTLLPLDDRRVMVGTSRGLSIIE------------EGLAHSALMPQVGARPSILS---LA 383
++L L +++VG S G+ + E A+ L I +
Sbjct: 284 FSVLNLGTEKLLVGGSAGVFWVNTKLNKWEKIEELEFFANGGLYRDKSGMIWICGKNGFS 343
Query: 384 KAD----------------------QQGEKVWVGTVQKGLLLWQ--NGQLRPVLDENN-- 417
K D G+ WVGT KGL + N + + N
Sbjct: 344 KIDFNQYKFNFISLPFGQAEIKSIISYGKDFWVGT-NKGLFKYNPDNHAVSKLQHTGNPN 402
Query: 418 GLPSSEVRAIVTDPQDNLWIGTSNGIVK-------------RTPQGV------------- 451
L SSE+ + TD ++ LW+ NG + R+ G
Sbjct: 403 SLSSSEIINLSTDLKNRLWVMGENGFDRYDEKANKFIHHHHRSALGSFFNEDVFRDLIEV 462
Query: 452 ------------LTTYN-------------KDNSPLPDDYIMALAVDSEGKLWVGS-AVG 485
L YN K+ + L ++++ L D++G +W+G+ G
Sbjct: 463 NADEYYLATDAGLKVYNDKTNSYTHYFNDPKNQASLSNNHLYCLLKDAQGNVWIGTYGSG 522
Query: 486 VAYFDAQG-KIRPVDLTKQEQA----QYVFGFYMESDY-VWMATDRGIVRYRLSDASVSL 539
++ F+ + K + ++ V Y++S VW+ T G+ +Y + +
Sbjct: 523 LSRFNPKTRKFSNYMINNSKRGGISNNIVNSLYLDSHQNVWVCTRDGLNKYIAKTNTFEI 582
Query: 540 VGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEGDG 599
+ G + F ++ D+ G +W+++ +G+ ++ D +S ++ ++DE DG
Sbjct: 583 YSKQNGFASNVFTDLVEDNNGRLWVTTEQGI---------SLFDPVSKMVK--NYDEKDG 631
Query: 600 MATSQANGGTNPASASLPNGELLFATAKGVASIKVQRLQQLSELRLPVVLESVSFDSEII 659
+ N A GE+ A +KG+ Q L+ ++ V S +++I
Sbjct: 632 VYA-------NAAICKNAKGEIYLAGSKGIVYFNPQLLKY-NKTAPAVYFSDFSIFNKLI 683
Query: 660 NPDQQ-------YIAAAGT-----NRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGH 707
P Y+ T + +SFG+V L + +SE+ +Y LEGFD+ W+Y G
Sbjct: 684 LPGDDSPLKLPVYMTREITLPYSQSVLSFGFVALNYTLSEKNKYAYFLEGFDKKWNYSGS 743
Query: 708 NTQAEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALA 767
+ YTNL PGKY V A G WN S I P W++ + G+ F +
Sbjct: 744 EHKVTYTNLNPGKYVLKVRASNNDGIWNMEGNSIGITITPPWYRTWWAFCIYGLTFFGMI 803
Query: 768 VSLVMWR 774
+ + +R
Sbjct: 804 YAYLKYR 810
Score = 60.8 bits (146), Expect = 6e-13
Identities = 121/596 (20%), Positives = 219/596 (36%), Gaps = 146/596 (24%)
Query: 36 YFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVF-DRNPQTGMVDSG 94
Y ++T+ +GLP S + + + G++W T G+ +++G F+++ + T + +
Sbjct: 37 YVIKTYGINEGLPSKSTTAALKDKRGFIWVGTENGLCKFDGYAFKIYVNITGDTTSLTNN 96
Query: 95 TRTLLPMDNNGLLVAGARGS------ITHRQSYGWQSFRSAPSLVN----GALIDDAQNL 144
+ D NG+ G +T + + + SL N LID L
Sbjct: 97 YINAVVEDKNGVFWVGTMNGLNKFDPVTEKFERFYHKENNRTSLSNNKIWSLLIDRTNKL 156
Query: 145 WLAI-EGLGVVVRPYLGNNLYGP---DRWLLTDASVYRLVKNQHGVIFAAT-DKGLYRF- 198
W+ +G + + +Y P D + SV + +++ G ++ KGL +F
Sbjct: 157 WVGTDDGFNLFNKNSNAFTVYQPDFKDPDAIKGKSVNAIAEDKAGNLWLGNWSKGLNKFD 216
Query: 199 --------------------ND------------WQASAMELPIGRYER-----INYIS- 220
ND W S + + R++ Y S
Sbjct: 217 KKTKSFKNYTQKEVAGEKNPNDIWTLCLDADGMIWIGSYWKGDLFRFDPKSESFTTYASK 276
Query: 221 ----------ISLNQE-LVVATDQGV-WINTEEGFQSLFVPLEKEVVTLAEQDRAGNWWI 268
++L E L+V GV W+NT+ LE +D++G WI
Sbjct: 277 GTGNASIFSVLNLGTEKLLVGGSAGVFWVNTKLNKWEKIEELEFFANGGLYRDKSGMIWI 336
Query: 269 GTVNRGIARLKNQQLQFLEPSRGLPYSR-----VLSWYQDIEGSVWVGTNAGIMR----- 318
N G +++ Q +F S LP+ + ++S+ +D WVGTN G+ +
Sbjct: 337 CGKN-GFSKIDFNQYKFNFIS--LPFGQAEIKSIISYGKDF----WVGTNKGLFKYNPDN 389
Query: 319 --------------LRDAPFININSD----------------------------KGLVG- 335
L + IN+++D + +G
Sbjct: 390 HAVSKLQHTGNPNSLSSSEIINLSTDLKNRLWVMGENGFDRYDEKANKFIHHHHRSALGS 449
Query: 336 ----DYVRTLLPLDDRRVMVGTSRGLSIIEE---GLAHSALMP--QVGARPSILSLAKAD 386
D R L+ ++ + T GL + + H P Q + L D
Sbjct: 450 FFNEDVFRDLIEVNADEYYLATDAGLKVYNDKTNSYTHYFNDPKNQASLSNNHLYCLLKD 509
Query: 387 QQGEKVWVGTVQKGLLLWQNGQLRPVLD------ENNGLPSSEVRAIVTDPQDNLWIGTS 440
QG VW+GT GL + N + R + + G+ ++ V ++ D N+W+ T
Sbjct: 510 AQG-NVWIGTYGSGLSRF-NPKTRKFSNYMINNSKRGGISNNIVNSLYLDSHQNVWVCTR 567
Query: 441 NGIVKRTPQ-GVLTTYNKDNSPLPDDYIMALAVDSEGKLWVGSAVGVAYFDAQGKI 495
+G+ K + Y+K N + L D+ G+LWV + G++ FD K+
Sbjct: 568 DGLNKYIAKTNTFEIYSKQNG-FASNVFTDLVEDNNGRLWVTTEQGISLFDPVSKM 622
Score = 26.9 bits (58), Expect = 0.010
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 34 SDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRY--NGINFQVFDRNPQTGMV 91
S+Y + + G+ +N +NS+ +W T +G+ +Y F+++ + Q G
Sbjct: 534 SNYMINN-SKRGGISNNIVNSLYLDSHQNVWVCTRDGLNKYIAKTNTFEIYSK--QNGFA 590
Query: 92 DSGTRTLLPMDNNGLL 107
S T L DNNG L
Sbjct: 591 -SNVFTDLVEDNNGRL 605