Pairwise Alignments
Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1347 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5
Score = 150 bits (380), Expect = 4e-40
Identities = 192/856 (22%), Positives = 337/856 (39%), Gaps = 164/856 (19%)
Query: 46 GLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGMVDSGTRTLLPMDNNG 105
GL +NS+N+I + G++WF T +G+ +YNG +F+++ NP
Sbjct: 35 GLSNNSVNAIYKDHFGFMWFGTDDGLNQYNGYSFRIYRNNP------------------- 75
Query: 106 LLVAGARGSITHRQSYGWQSFRSAPSLVNGALI----DDAQNLWLAIE-GLGVV------ 154
+ SLVN +I D + LW+A + G+ V+
Sbjct: 76 ---------------------NDSSSLVNNQVIGMAEDGSGTLWIATKRGVSVLHSFPSK 114
Query: 155 -VRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIF-AATDKGLYRFNDWQASAMELPIGR 212
V+P Y + D +Y + HG +F A+D GL +++ ++
Sbjct: 115 FVKPIF--KAYNDKKARPIDQEIYAIKGGNHGDVFIGASDLGLLVYDNHSRETRQVSFQP 172
Query: 213 YERINYISISLNQELVVATDQGVWINTEEG-----FQSLFVPL-----EKEVVTLAEQDR 262
E++ ++ + + D+ IN +G ++S + L + E D+
Sbjct: 173 GEKV--LTPYSIRAIRPVQDRAWLINPAKGLAYYDYRSKQISLVSSNGDIRNANSIEADQ 230
Query: 263 AGNWWIGTVNRGIAR----LKNQQLQFLEPSRGLPYSRVLSWYQDIEGSVWVGTNAGIMR 318
+GN WIGT + G+ R K+ + + P + L R+LS D + + T+ G +
Sbjct: 231 SGNLWIGT-DHGLYRYNILAKSFKWYSVAPGQ-LLAQRILSLAFDRRNRLLIATDGGGIN 288
Query: 319 LRDAPFININ------SDKGLVGDYVRTLLPLDDRRVMVGTSR-GLSIIE------EGLA 365
+ D + + S L + + +L ++ R+ VGT R G+++++ + +
Sbjct: 289 IMDTEKESFSYQTAGESPSSLNSNAISVILKDEEHRIWVGTLRGGINVLDRKRNEFKHIY 348
Query: 366 HSALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLWQNGQLRPVLDENNGLP----S 421
+ L Q ILS + D+ G K+W+GT G+ LW + NG P S
Sbjct: 349 RNPLSQQSLVSDFILSFCE-DRDG-KIWIGTDGGGISLWDRLKGFKTYRHENGNPQSLSS 406
Query: 422 SEVRAIVTDPQDNLWIGTSNGIVKR--TPQGVLTTYNKDNSPLPDDYIMALAVDSEGKLW 479
+ V +IV D +WI T G + R G Y NS D+ + L +D +G +W
Sbjct: 407 NNVTSIVRSNNDVIWIATFGGGINRYNRGSGTFKYYPCANSWGKDENVWKLFIDKKGGIW 466
Query: 480 VGSAVGVA----YFDAQGKIRP---------VDLTKQEQAQYVFG--------------- 511
G+ VGV Y A + P + + + + FG
Sbjct: 467 AGTCVGVGLLYHYNVASDRFEPFNNEHLKNIIAINEDKLGNLWFGSFNKLYKYTAGGKVI 526
Query: 512 -----------FYMESDYVWMATD-RGIVRYRLSDASVSLVGRAAGLPIDKFFQMLRDSE 559
F+ +S +++ T G+++Y + S + GL + + D
Sbjct: 527 TYDIRYPIRSIFFNKSGDLFVGTQYAGLLKYNSKNGSFQAFTESDGLSNNTVLNIEEDDH 586
Query: 560 GHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEGDGMATSQANGGTNPASASLPNG 619
++WLS+ G+ K NY F F +G+ Q N ASA L +G
Sbjct: 587 ANLWLSTFNGLTKFNY-----------RNNTFNKFYIENGL---QCNEFNYNASAHLRSG 632
Query: 620 ELLFATAKGVASIKVQRLQQLSELRLPVVLESVSFDSEIINPDQQYIAAAGTNR------ 673
+LLF KG + S P+ L + +E + D Y A+ +
Sbjct: 633 QLLFGGIKGFNIFNPDSIMNNSAFP-PLRLTDLRASNEPLISDAAYSASLYDTKEIKIPY 691
Query: 674 ----VSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNTQAEYTNLAPGKYRFFVSARY 729
+SF Y L + R+ Y LEG + +W+ Y+ L G Y + +
Sbjct: 692 DRALLSFDYSALEYSFPSRISYSYYLEGLENNWNNVRTARSGNYSRLHEGTYVLHIRSTN 751
Query: 730 PYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLVEQV 789
G WN + II P W++ A + +LA+ +S +++R K ++ L Q+
Sbjct: 752 GEGIWNPRQLTLKIIILPPWYRS----WWAYLTYLAI-ISYLLYRFNRYKSNQVRLNYQI 806
Query: 790 ALQTQKLRLQAEKFER 805
+ T + E ER
Sbjct: 807 EMATANAEKERELNER 822
Score = 43.1 bits (100), Expect = 1e-07
Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 41/310 (13%)
Query: 290 RGLPYSRVLSWYQDIEGSVWVGTNAGIMRLRDAPF----ININSDKGLVGDYVRTLLPLD 345
+GL + V + Y+D G +W GT+ G+ + F N N LV + V +
Sbjct: 34 KGLSNNSVNAIYKDHFGFMWFGTDDGLNQYNGYSFRIYRNNPNDSSSLVNNQVIGMAEDG 93
Query: 346 DRRVMVGTSRGLSIIEEGLAHSALMP------QVGARP--SILSLAKADQQGEKVWVGTV 397
+ + T RG+S++ + P ARP + K G+ V++G
Sbjct: 94 SGTLWIATKRGVSVL-HSFPSKFVKPIFKAYNDKKARPIDQEIYAIKGGNHGD-VFIGAS 151
Query: 398 QKGLLLWQN--GQLRPVLDE--NNGLPSSEVRAIVTDPQDNLW-IGTSNGIV---KRTPQ 449
GLL++ N + R V + L +RAI QD W I + G+ R+ Q
Sbjct: 152 DLGLLVYDNHSRETRQVSFQPGEKVLTPYSIRAI-RPVQDRAWLINPAKGLAYYDYRSKQ 210
Query: 450 GVLTTYNKDNSPLPDDYIMALAVDSEGKLWVGSAVGVAYFDAQGK------IRPVDLTKQ 503
L + N D ++ D G LW+G+ G+ ++ K + P L Q
Sbjct: 211 ISLVSSNGDIR-----NANSIEADQSGNLWIGTDHGLYRYNILAKSFKWYSVAPGQLLAQ 265
Query: 504 EQAQYVFGFYMESDYVWMATDRG---IVRYRLSDASVSLVGRA-AGLPIDKFFQMLRDSE 559
F + + +ATD G I+ S G + + L + +L+D E
Sbjct: 266 RILSLAFD---RRNRLLIATDGGGINIMDTEKESFSYQTAGESPSSLNSNAISVILKDEE 322
Query: 560 GHVWLSSNRG 569
+W+ + RG
Sbjct: 323 HRIWVGTLRG 332
Score = 33.1 bits (74), Expect = 1e-04
Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 69/312 (22%)
Query: 43 STDGLPHNSINSIAQTRDGYLWFATWEGVV----RYNGI-NFQVFDRNPQTGMVDSGTRT 97
S L + I S + RDG +W T G + R G ++ + NPQ+ + S T
Sbjct: 353 SQQSLVSDFILSFCEDRDGKIWIGTDGGGISLWDRLKGFKTYRHENGNPQS--LSSNNVT 410
Query: 98 LLPMDNNGLLVAGARGSITHRQSYGWQSFRSAPSLVNGALIDDAQNLWLAIEGLGVVVRP 157
+ NN ++ G +R + G +F+ P
Sbjct: 411 SIVRSNNDVIWIATFGGGINRYNRGSGTFKYYPCA------------------------- 445
Query: 158 YLGNNLYGPDRWLLTDASVYRLVKNQHGVIFAATDKG---LYRFNDWQASAMELPIGRYE 214
N +G D +V++L ++ G I+A T G LY +N AS P
Sbjct: 446 ----NSWGKDE------NVWKLFIDKKGGIWAGTCVGVGLLYHYN--VASDRFEPFNNEH 493
Query: 215 RINYISISLNQELVVATDQGVWINTEEGFQSLF-VPLEKEVVTLAEQ--------DRAGN 265
N I+I N++ + +W + F L+ +V+T + +++G+
Sbjct: 494 LKNIIAI--NEDKL----GNLWFGS---FNKLYKYTAGGKVITYDIRYPIRSIFFNKSGD 544
Query: 266 WWIGTVNRGIARL--KNQQLQFLEPSRGLPYSRVLSWYQDIEGSVWVGTNAGIMRL--RD 321
++GT G+ + KN Q S GL + VL+ +D ++W+ T G+ + R+
Sbjct: 545 LFVGTQYAGLLKYNSKNGSFQAFTESDGLSNNTVLNIEEDDHANLWLSTFNGLTKFNYRN 604
Query: 322 APFININSDKGL 333
F + GL
Sbjct: 605 NTFNKFYIENGL 616
Score = 32.3 bits (72), Expect = 2e-04
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 39 ETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYN 75
+ +T +DGL +N++ +I + LW +T+ G+ ++N
Sbjct: 565 QAFTESDGLSNNTVLNIEEDDHANLWLSTFNGLTKFN 601