Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1226 a.a., PAS/PAC sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (366), Expect = 2e-38
 Identities = 195/852 (22%), Positives = 353/852 (41%), Gaps = 102/852 (11%)

Query: 14  ICSVFLLIISSSAYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVR 73
           I S+ LL++ S       +   +  +++ + +GL  N++  I   ++G+LW AT  G+ R
Sbjct: 5   ILSLLLLLLVSQPSLAFSYQPQF--DSFGAKEGLSMNTVTDIVNDKEGHLWIATQAGLNR 62

Query: 74  YNGINFQVFDRNPQTGMVDSGTRTLLPMDNNGLLVAGARGSIT--HRQSYGWQSFRSAPS 131
           Y+G  F++FD         +     L    + L +      I   H  S  ++ F ++ S
Sbjct: 63  YDGKRFKIFDTQGDNRGPSAKYIKKLHFSRSTLWLITRNEGINRYHADSSIFEPFNASNS 122

Query: 132 LVNGALID---DAQ-NLWLAIEGLGVVVRPYLGNNLYGP----DRWLLTDASVYRLVKNQ 183
            +   ++D   DAQ NLW+A     ++      N L           L    +  L +++
Sbjct: 123 PLPDDIVDLDEDAQGNLWIATADNRLLYFSPASNKLLATLDSSTTQGLPSGRINTLYRDR 182

Query: 184 HGVIFAATDKGLYRFNDWQASAMELPIGRY-----ERINYISISLNQELVVATD-QGVW- 236
              ++  T  GL      +    E+ + +Y       ++ I    +  L V T  +G++ 
Sbjct: 183 QDRLWIGTLNGLASLKQTED---EISVTQYAPEVLRGVSAIEAGKSNTLWVGTQTRGLFL 239

Query: 237 --INTEEGFQSLFVPLEKEV-VTLAEQDRAGNWWIGTVNRGIARLK--NQQLQFLEPSRG 291
             I  ++      VP      ++   +D+ G+ WIG   +G+AR +    ++  L  S  
Sbjct: 240 LDITNDQAMAIAAVPASPAFSISALRRDKFGSLWIGFRAQGLARYEPSRNEIHRLNASAE 299

Query: 292 LPYSR----VLSWYQDIEGSVWVGTNAGIMR--LRDAPFIN-----INSDKGLVGDYVRT 340
             YS     + S + D E  +W+G+  G +     DA +         +D  L+   +R+
Sbjct: 300 NRYSINSPVITSLWIDNEQQLWIGSKGGGLSKTFLDAQYFGHIHGFSFNDNNLLNVDIRS 359

Query: 341 LLPLDDRRVMVGTSRGLSIIEEGLAH-----SALMPQVGARPSI----LSLAKADQQGEK 391
           LL      + VGT+ G   +  GL +     +  +P     P++    +S  K D+ G+ 
Sbjct: 360 LLEDSQGTLWVGTASG---VYRGLKNPRGELTGFIPFHVQNPALSQAFISFIKEDELGQ- 415

Query: 392 VWVGTVQKGLLLW---QNGQLRPVLDEN--NGLPSSEVRAIVTDPQDNLWIGTSNGIVKR 446
           +W+GT   GL ++   +   +  + D    N LPS+++ ++  D Q   WI +S+G + R
Sbjct: 416 LWIGTRGDGLFIYTADKQSYIHYLADAKSPNSLPSNQLYSLYFDRQGTPWITSSDGGIAR 475

Query: 447 TPQGVLTTYNKDNSPLPDDYIMALAVDSEGKLWV-GSAVGVAYFDAQGKIR------PVD 499
              G+ T +     PLP   +  +  D +G  W+  S+ G+    A G+I       P  
Sbjct: 476 YA-GIATGFIA--VPLPIKTVTDMLQDGDGNYWLTSSSDGLLRLAANGEITHFASHTPHA 532

Query: 500 LTKQEQAQYVFGFYMESDYVWMATDRGIVRYRLSDASVSLVGRAAGLPIDKFFQMLRDSE 559
           L KQ     V G   +   +W+A++ G++ +   D S  L+  A GL  D  + +  D  
Sbjct: 533 LPKQHLFSIVAG---DKHSLWIASNEGLLHFNTQDFSSRLLTTADGLIDDTIYLLFADQR 589

Query: 560 GHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEGDGMATSQANGGTNPASASLPNG 619
            H+WL + +G+ +L+ D            L+  ++ + DG+  ++ N G   A+A   N 
Sbjct: 590 RHLWLGTTKGLTQLDPDS-----------LKTTNYTDIDGIQDNEFNFG---AAALGRNN 635

Query: 620 ELLFATAKGVASIKVQRLQQLSELRLPVVLESVSFDSEIINPDQQYIAAAGTNRV----- 674
            L      G       +L +     LPV+ +          PD       GT R+     
Sbjct: 636 TLYLGGVNGFNHFNPAQLPRRQPPTLPVITDLFVLGQAQGLPDMDQ----GTPRLPPSLA 691

Query: 675 --------SFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNTQAEYTNLAPGKYRFFVS 726
                   S  Y       + RL Y+ +L G +  W        A +T L PG Y F + 
Sbjct: 692 LPHTADIFSLHYHSPDLHNATRLSYQYRLLGLNDTWIAGSPEQVAYFTGLNPGNYLFEIR 751

Query: 727 ARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELYLV 786
           A+    +++        ++EP  WQ      +   L L L VSL+ +R     +++  L+
Sbjct: 752 AKDINQQYSPIR-RLKIMLEPAPWQSPFAYTLYFTLTLML-VSLIFYRKWSQYQQQAALL 809

Query: 787 EQVALQTQKLRL 798
            +VA   Q+L+L
Sbjct: 810 HEVAESEQRLQL 821