Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  126 bits (316), Expect = 1e-32
 Identities = 167/768 (21%), Positives = 298/768 (38%), Gaps = 123/768 (16%)

Query: 43  STDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGM-VDSGTRTLLPM 101
           S DGL  N+I S+     G LW  T +G+  YNG NF +F  +P     +     + +  
Sbjct: 52  SEDGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQ 111

Query: 102 DNNGLLVAGARGSITHR--------QSYGWQSFRSAPSLVNGALIDDAQNLWLAIEG--- 150
           D  G L  G+     +R        + +G +   + P +    ++ +   LW+  +    
Sbjct: 112 DAEGYLWVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTKLNIVGNT--LWIGTQSGLF 169

Query: 151 -------------LGVVVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIFAATDKGLYR 197
                        LG  + PY+ +        L    + Y L   +    FA +   + R
Sbjct: 170 SFSTRTNRLTKVSLGTSIEPYITS--------LANVDNTYLLAGTKGSGTFAVSANTITR 221

Query: 198 FNDWQASAMELPIGRYERINYISISLNQELV---VATDQG--VWINTEEGFQSLFVPLEK 252
            N  Q +          R   I+++L  +L    +AT QG  +W   +       +P  K
Sbjct: 222 LNIPQDAIAYQVKANSSRA--ITLALGNQLWHYDLATQQGKALWQADKN------IPYIK 273

Query: 253 EVVTLAEQDRAGNWWIGTVNRGIARLKNQQLQF--------LEPSRGLPYSRVLSWYQDI 304
           + +   E    G +W+     G+ +L+ +  +F        ++ +  +  + +LS  +D 
Sbjct: 274 DFIQTPE----GQFWVVGPEAGLIQLEREADKFVATYHQYDMKRTNSISENNILSLLEDP 329

Query: 305 EGSVWVGTN-AGIMRLRDAP-----FININSDKGLVGDYVRTLLPLDDRRVMVGTS---- 354
            G++W+G + +G+ ++              ++  L  + VRT+    D+ + +GT     
Sbjct: 330 FGNLWLGASYSGLNKINTRRQYFQHLFEYTNELPLQSNNVRTIYRSQDQALWIGTEGAGL 389

Query: 355 RGLSIIEEGLAH------SALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLWQNGQ 408
           + L++      H       AL  Q      IL     D+QG   +      G L   NG+
Sbjct: 390 KRLAVNSTTFEHYTSFFAKALGQQTQHLNLILRSIVQDKQGILWFASNYGLGRLT-PNGE 448

Query: 409 ---LRPVLDENNGLPSSEVRAIVTDPQDNLWIGTSNGIVKRTPQGVLTTYNKDNSPLP-- 463
              L      +    ++ +R++  D Q+ LW+ TS+ + +++      + N + +P+P  
Sbjct: 449 FNLLNVADSRDTSAEANYIRSLELDNQNRLWVATSHALYRKS------SVNDEFTPVPLT 502

Query: 464 --------DDYIMALAVDSEGKLWVGSAVGVAYFDAQ---GKI---RPVDLTKQEQAQYV 509
                    + ++ L  D +  LW+GS  G+   D Q   G++    P D       +  
Sbjct: 503 GIENFHPIQNLLLTLKSD-KNILWIGSLNGLVKLDMQTGHGEVFYHDPHDKNSIINNRIR 561

Query: 510 FGFYMESDYVWMATDRGIVRYRLSDAS--VSLVGRAAGLPIDKFFQMLRDSEGHVWLSSN 567
             F   +   W AT  GI R      S   S   R  GLP D  + +L D + H+W SSN
Sbjct: 562 DIFVASNGDTWFATHGGISRLPAQALSPIFSDYTREQGLPSDTIYALLEDDDNHIWFSSN 621

Query: 568 RGVWKLNYDQMLAVADGMSTQLEFEHFDEGDGMATSQANGGTNPASASLPNGELLFATAK 627
            G+ KLN      +           +F+E +G+   + NGG     +   +G+L F    
Sbjct: 622 AGIGKLNPHNGKII-----------NFNEQEGLQALEFNGGVKLKDS---DGDLWFGGIN 667

Query: 628 GVASIKVQRL-QQLSELRLPVVLESVSFDSEII---NPDQQYIAAAGTNRVSFGYVGLGF 683
           G+     + L  Q SE R+ +    ++   + I   +   Q +       +SF    L F
Sbjct: 668 GINRFNPKTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQIVMNYADQLISFEVTSLDF 727

Query: 684 VMSERLQYRTKLEGFDRDWSYRGHNTQAEYTNLAPGKYRFFVSARYPY 731
               + ++   LEGFD  W       +  +TN+ PG Y   V     Y
Sbjct: 728 SYPGKNRFSYFLEGFDNQWHDLPTGNEITFTNIDPGNYLLHVRHSLEY 775



 Score = 88.6 bits (218), Expect = 3e-21
 Identities = 60/163 (36%), Positives = 82/163 (50%), Gaps = 2/163 (1%)

Query: 801  EKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSHII 860
            E    L+  D LTGL NR  F   L  A S+    +  V++  LD+D FK IND   H I
Sbjct: 1076 EDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHI 1135

Query: 861  GDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPK-QAWGYFEKLRCKIEQVDLSA 919
            GD  + AV+  L   V +   VAR GG+EFTI+  G  K +A     +   K  Q     
Sbjct: 1136 GDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLL 1195

Query: 920  VAPGLNVTVSIGFA-DAQQAESYETVLKLADHALLTAKKLGRN 961
                LN++ SIG +     A+  ++++K AD A+  AK LGRN
Sbjct: 1196 DDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRN 1238



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 26  AYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRN 85
           A A+    SDY     T   GLP ++I ++ +  D ++WF++  G+ + N  N ++ + N
Sbjct: 584 AQALSPIFSDY-----TREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFN 638

Query: 86  PQTGM 90
            Q G+
Sbjct: 639 EQEGL 643



 Score = 33.5 bits (75), Expect = 1e-04
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 280 NQQLQF--LEPSRGLPYSRVLSWYQDIEGSVWVGTNAGIMRLRDAPF----ININSDKGL 333
           N QL+F  +    GL  + + S + D  G +W+GT  G+       F     + N  K +
Sbjct: 42  NTQLKFEHIRSEDGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSI 101

Query: 334 VGDYVRTLLPLDDRRVMVGT-SRGLSIIEEGLAHSALMPQVGARPSILS--LAKADQQGE 390
              YV  ++   +  + VG+ S+G++ ++     +    + G    +    + K +  G 
Sbjct: 102 SESYVSDIIQDAEGYLWVGSFSQGINRLD---LKTGTFKRFGVEQGLTDPRVTKLNIVGN 158

Query: 391 KVWVGTVQKGL 401
            +W+GT Q GL
Sbjct: 159 TLWIGT-QSGL 168