Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1381 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  140 bits (352), Expect = 8e-37
 Identities = 197/872 (22%), Positives = 365/872 (41%), Gaps = 121/872 (13%)

Query: 17  VFLLIISSSAYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNG 76
           +FLL+ S+   A  + I +   +  ++   LP N +  + Q +DG++WFAT  G+ +YNG
Sbjct: 18  LFLLLKSALLLATEDVIYNLKFKQLSAPYSLPTNEVQKVYQDKDGFIWFATRNGLCQYNG 77

Query: 77  INFQVFDRNPQT-GMVDSGTRTLLPMDNNGLLVAG-ARGSITHRQSYGWQSFRSAPSLVN 134
               ++  N  +  ++ + + T L  DNN  L  G + G     +  G      AP L N
Sbjct: 78  YETTLYKSNLYSPDLLTTNSITCLVDDNNNHLWIGTSEGLNVMDKRTGEIKKYKAPYLSN 137

Query: 135 GAL----IDDAQNLWLAIE-GLGVVVRP----YLGNNLYGPDRWLLTDASVYRLVKNQHG 185
             +    +     +W+  + GL   V       +  + +G  R  L   ++  L+++  G
Sbjct: 138 NVVSALCVTRDNTVWVGTDNGLCRYVAEKDTFVVCGDDFGDSR--LRYVTIKSLLEDSDG 195

Query: 186 VIFAAT-DKGLYRFNDWQASAMELPIGRYERIN--YISISLNQELVVATDQGVWINT-EE 241
            ++  T  +GL+R++      +E+    Y +IN  Y S  + ++    +++ +W+ +   
Sbjct: 196 DLWIGTWAQGLFRYSP-STDKVEI----YPKINDQYSSHVIYED----SNKDIWVGSWGY 246

Query: 242 GFQSLFVPLEKEVVT---------------------LAEQDRAGNWWIGTVNRGIARLK- 279
           G   L  P + + V+                     +AE       W+GT   G++ LK 
Sbjct: 247 GLFKLQNPKDMQRVSYQRFLHENGDDSSLSDNIVYDIAEDINTHTLWVGT-RSGLSILKL 305

Query: 280 NQQLQFLEPSRG-----LPYSRVLSWYQDIEGSVWVGTNAGIMRLRDA-----PFININ- 328
           ++   F+    G     +P   V S  +D + ++W+G   G + + D          +N 
Sbjct: 306 DEPDAFINYKSGKTDYRIPSDEVNSIMRDAQRNMWIGAIGGGVLMADTRQSTFALYTLNF 365

Query: 329 SDKGLVGDYVRTLLPLDDRRVMVGTSR-GLSIIE------EGLAHSALMPQVGARPSILS 381
            D+ +    VRTL    D+ + +G    GL+  E      +  +H      +   PS+ +
Sbjct: 366 GDEDIPVTSVRTLFADSDQNLWIGVGTYGLACREYETGKLKMYSHIPEFSGLKDLPSLFA 425

Query: 382 LAKADQQGEKVWVGTVQKGLLLWQNGQ-LRPVLDENNGLPSSE-VRAIVTDPQDNLWIGT 439
           + +  + GE +W G    G+ +++ G+ ++ +  +N+G  +S+ V A+  D + N W+GT
Sbjct: 426 VTQRKKSGE-IWFGMYNGGIYVYRKGEKVKHLTTKNSGFLTSDCVSALYEDYEGNCWVGT 484

Query: 440 SNGIVKRTPQGVLTTYNKDNSPLPDD------YIMALAVDSEGKLWVGSA-VGVAYFDAQ 492
             GI  R   G  T Y  +     D       Y+  +  D +  +W+ ++ +GV +    
Sbjct: 485 RGGIGVRLADG--TDYRFETMNFNDSLSAGWIYVRDIIKDMDSSVWLATSNLGVIHIT-- 540

Query: 493 GKIRPVDLTKQEQAQY---------VFGFYMES-DYVWMATDRG-IVRYRLSDASVSLVG 541
           G +R     K E   +         V   +++    +W  T+ G +  Y  +        
Sbjct: 541 GDVRQPSTLKYENYSFHNRKLITNAVLCIHLDRFGRLWAGTEGGGLYLYNRNKGEFEEKT 600

Query: 542 RAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEGDGMA 601
           RA  +P D    +  D  G++WL +  G+ KL    + AV +  ST++    +   DG+ 
Sbjct: 601 RAYSIPGDVIVSIEEDKSGNLWLGTISGLVKL---YVAAVGNDFSTRI----YTSADGL- 652

Query: 602 TSQANGGTNPASASLPNGELLFATAKGVASIKVQRL----QQLSELRLPVVLESVSFDSE 657
             Q N   N  S+   NGEL F   KG  S    ++    Q+ + L   + + + SF + 
Sbjct: 653 --QDNFIVN--SSCSRNGELFFGGHKGYNSFFPDKMEIPSQETNFLITDIKIFNHSFSNL 708

Query: 658 IINPDQQYIAAAGT-----------NRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRG 706
            +   Q+      T           N  S  +  L +   E  +Y  +L+ FDRDW Y  
Sbjct: 709 PVELQQKISPVMPTYTSKIELPHKYNNFSIEFAALTYKNPELNRYAYRLQNFDRDWQYTD 768

Query: 707 HNTQ-AEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLA 765
            + + A Y NL  G Y F + A    GEW+        ++ P +W      ++  ++   
Sbjct: 769 ADRRFAYYNNLPSGTYTFQLKATNENGEWSGYVRELTVVVLPPFWATWWAYLLYVIIVSV 828

Query: 766 LAVSLVMW-RIRILKRRELYLVEQVALQTQKL 796
           + VS+    + RIL R  L L E    + ++L
Sbjct: 829 IGVSIYRTAKNRILLRNALRLREIEKAKAEEL 860