Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1376 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  130 bits (327), Expect = 6e-34
 Identities = 192/862 (22%), Positives = 333/862 (38%), Gaps = 119/862 (13%)

Query: 14  ICSVFLLIISSSAYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVR 73
           I + FLL+   SA  V  H   Y ++      GL +N + SI Q + G+LWFAT EG+ +
Sbjct: 5   IAAFFLLL---SATFVAAH--PYLIQRLGIEQGLSNNYVLSITQDKQGFLWFATEEGLNK 59

Query: 74  YNGINFQVFDRNPQTGMVDSGTRTLLPMDNNG-----LLVAGARGSITHRQSYGWQSF-- 126
           ++G  F  + +  Q+  V S T   L           + +A  R  + +  +Y  QSF  
Sbjct: 60  FDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGL-NAYNYETQSFSV 118

Query: 127 -----RSAPSLVNGAL------IDDAQNLWLA-----IEGLGVVVRPYLGNN------LY 164
                    SL+   +      +   + LW+      IE L +    +   N      L 
Sbjct: 119 YQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALP 178

Query: 165 GPDRWLLTDASVYRL-VKNQHG--VIFAATDKGLYRFNDWQASAMELPIGRYERINYISI 221
               W  T+A   +L + +  G   I +  DK +  F     +   LP G   R  Y   
Sbjct: 179 SEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLP-GNDVRCIYKD- 236

Query: 222 SLNQELVVATDQGVWINTEEGFQSLFVPLE----------------KEVVTLAEQDRAGN 265
                    T+  +WI T +G        E                   +   +Q +   
Sbjct: 237 ---------TNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK 287

Query: 266 WWIGTVNRGIARLKNQQLQFLEPSR-------------GLPYSRVLSWYQDIEGSVWVGT 312
            WI T   GI  L  QQ QFL P +              L  +     +QD   ++W+GT
Sbjct: 288 LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGT 347

Query: 313 -NAGIMRLRDAPFI--------NINSDKGLVGDYVRTLLPLDDRRVMVGTSRG-LSIIEE 362
              GI  + +AP             ++  L    V ++      ++ +GT  G +++ E 
Sbjct: 348 WGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 407

Query: 363 GLAHSALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLWQNGQLRPV----LDENNG 418
           G   +    +     S   L         +W GT   G + + N +L+      L++N  
Sbjct: 408 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYL-GNISYYNTRLKKFQIIELEKNEL 466

Query: 419 LPSSEVRAIVTDPQDNLWIGTSNGI--VKRTPQGVLTTYNKDNSPLPDDYIMALAVDSEG 476
           L   +VR    D    +WIGT  G+  +    + V+  Y+  NS L ++++ ++A DSEG
Sbjct: 467 L---DVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG 523

Query: 477 KLWVGS---AVGVAYFDAQGKIRPVDLTKQEQAQYVFGFYMES-DYVWMATDRGIVRY-R 531
           + W+G+    VG+   D Q  +R  +  +   +  +   Y  S   +W+AT  G+V +  
Sbjct: 524 RFWIGTFGGGVGIYTPDMQ-LVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPS 582

Query: 532 LSDASVSLVGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQLEF 591
             +    +  R  GLP      +  D  G++W S+N G+      +        S  +  
Sbjct: 583 ARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQ 642

Query: 592 EHFDEGDGMATSQANGGTNPASASLPNGELLFATAKGVASIKVQRLQQLSELRLPVVLES 651
             F    G  T   NG     S    NG   F     + S ++  +  ++++R+P  L S
Sbjct: 643 GSFI--SGCVTKDHNGLIYFGSI---NGLCFFNPDIAINSPQIPPV-VITKVRIPGRLTS 696

Query: 652 VSFDSEIINPDQQYIAAA-GTNRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNTQ 710
              +   I   +  I      N  +  +    + ++ +++Y   L+G +  W        
Sbjct: 697 REKNETAIPISEGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNS 756

Query: 711 AEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALAVSL 770
             + N+ PGKY F V AR    +W++ T S    I P  W    +   A ++++ + +S+
Sbjct: 757 VTFRNIPPGKYEFLVKARLHNQDWSEDTTSLRIHINPPLW----LTWWAKLIYILITISI 812

Query: 771 VMWRIRILKRR----ELYLVEQ 788
           +   I   K++     LY +E+
Sbjct: 813 IYTIIHAYKKKIDLESLYTLEK 834



 Score = 44.3 bits (103), Expect = 6e-08
 Identities = 70/364 (19%), Positives = 129/364 (35%), Gaps = 52/364 (14%)

Query: 13  QICSVFLLIISSSAYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVV 72
           ++  + +L +  + + + E I   F+    +   L + S   I Q     +W  TW G  
Sbjct: 293 ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGG-- 350

Query: 73  RYNGINFQVFDRNPQTGMVDSGTRTLLPMDNNGLLVAGARGSITHRQSYG--WQSFRSAP 130
              GINF      P T                            H  SY     +  S  
Sbjct: 351 ---GINF--ISNAPPT---------------------------FHTWSYSPTQMNESSLS 378

Query: 131 SLVNGALIDDAQ-NLWLAIEGLGV-VVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIF 188
           + V  ++ DD Q  LW+  +G G+ V        +Y  +   L   SV   +K+  G ++
Sbjct: 379 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW 438

Query: 189 AATDKG---LYRFNDWQASAMELPIGRYERINYISISLNQELVVATDQGVWI------NT 239
             T  G    Y     +   +EL       +       N+++ + T  GV++        
Sbjct: 439 FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKV 498

Query: 240 EEGFQSLFVPLEKEVVTLAEQDRAGNWWIGTVNRGIA--RLKNQQLQFLEPSRGLPYSRV 297
              + +    L +  V    QD  G +WIGT   G+       Q ++      G   + +
Sbjct: 499 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTI 558

Query: 298 LSWYQDIEGSVWVGTNAGIM---RLRDAPFININSDKGLVGDYVRTLLPLDDRRVMVGTS 354
              Y+  +G +W+ T  G++     R+  +      +GL   ++R +    +  +   T+
Sbjct: 559 NQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN 618

Query: 355 RGLS 358
            G+S
Sbjct: 619 TGIS 622