Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 915 a.a., transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  112 bits (279), Expect = 1e-28
 Identities = 175/810 (21%), Positives = 312/810 (38%), Gaps = 115/810 (14%)

Query: 36  YFVETWTSTDGLPHNSINSIAQTRDGYLWFATWEGVVRYNGINFQVFDRNPQTGMVDSGT 95
           Y       +DGL    +N+I +  +G++W  T  G+ R++G+  + F+       VDSG 
Sbjct: 14  YMFRNVVMSDGLSGLLVNAIYKDSEGFIWLGTDNGLDRFDGVKVKHFEFRG----VDSGR 69

Query: 96  R----TLLPMDNNGLLVAGARGSITHRQSYGWQSFRSAPSLVN---GALIDDAQNLWLAI 148
           +     +   DN  L +    G     +S G +  R  P  ++    AL+ D   L++  
Sbjct: 70  KKRVNCITETDNKQLWIGNGIGLWRLNRS-GSELQRIVPEKIDCAVNALLADGDVLYIGT 128

Query: 149 E-GLGVVVRPYLGNNLYGPDRWLLTDASVYRLVKNQHGVIFAATDKGLYRF-------ND 200
           E GL +     L       +     +  +   +     V++ AT +GL+ +       N 
Sbjct: 129 ERGLFIQKDGQLLQVQTDKNMLAACNRIMDLCLNEDKSVLWLATVQGLFSYSLKDGQINS 188

Query: 201 WQASAMELPIGRYERINYISISLNQELVVAT-DQG-VWINTEEGFQSLFVPLEKEVVTLA 258
           W      +P   Y R       + + L + T  QG V  +  +   +  V L  +V++  
Sbjct: 189 WHFRE-NVPEADYFR---CLTRIGETLYLGTMSQGVVCFDIPKQTFAHTVSLGCDVISDI 244

Query: 259 EQDRAGNWWIGTVNRGIARLKNQQLQF-------LEPSRGLPYSRVLSWYQDIEGSVWVG 311
             D     +I T   G+  L ++  +        +    G+  + + S   D  G+VWVG
Sbjct: 245 SGDGKETVYIATDGNGVHFLSHKDRKVVRRFFHDVNDKEGIRSNSIYSLLVDDRGAVWVG 304

Query: 312 ----------TNAGIMRLRDAPFININSDKGLVGDYVRTLLPLDDRRVMVGTSRGLSIIE 361
                        G+ R    P    NS    +  +V           ++G+  GL  I 
Sbjct: 305 HFQAGLDYSLYQNGLFRTYAYP-PQFNSANLSIRSFVNR-----GPEKVIGSRDGLFYIN 358

Query: 362 E--GLAHSALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLW--QNGQLRPVLDENN 417
           E  G+  S + P +    S L L     +GE  ++GT   G+++   Q   L+     + 
Sbjct: 359 EATGIVKSFVKPVL---TSDLILTICFYEGE-YYIGTYGGGMMVLNPQTLSLKYFTQGDT 414

Query: 418 GL-PSSEVRAIVTDPQDNLWIGTSNGIVKRTPQ-GVLTTYNKDNSPLPDDYIMALAVDSE 475
            L     +  +  D + NLWIGTS G+     Q   +  +   NS LP+  +  ++ DS 
Sbjct: 415 ELFQKGHIFCVKPDNRGNLWIGTSQGLFCYNGQTKQIKNFTSTNSQLPEGNVYEVSFDST 474

Query: 476 GKLWVGSAVGVAYFDA----------------QGKIRPVDLTKQEQAQYVFGFYMESDYV 519
           GK W+ +  G+  +D                 + K+R    T  E A++   F  E   +
Sbjct: 475 GKGWIATETGMCIYDPASQSLRSNVFPEGFVHKDKVR----TIYEDAEHNLYFIREKGSL 530

Query: 520 WMATDRGIVRYRLSDASVSLVGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQML 579
           + +T   +      + SV      + LP +    +  D++G +W+  N G+ ++  +   
Sbjct: 531 FTST---LTMDHFRNQSV-----LSTLPDNSLMSITEDNQGWLWVGCNDGLLRIKEEGE- 581

Query: 580 AVADGMSTQLEFEHFDEGDGMATSQANGGTNPASASLPNGELLFATAKGVASIKVQRLQQ 639
                     E++ F   DG+        TN A+     G L F   KG+  +  +++ +
Sbjct: 582 ----------EYDSFTFNDGVPGPTF---TNGAAYKDERGLLWFGNTKGLIYVDPKQVDE 628

Query: 640 LSELRLPVVLESVSFDSEIINPDQQYIAAAGTNRVSFGYVGLGFVMSERLQYRTKLEGFD 699
           +     P+V   +  +   IN           N ++F +    + +   L Y  KLEG D
Sbjct: 629 VRGKVRPIVFTDILANGVSINKSS---LKYNQNNLTFCFTDFAYGLPSALLYEYKLEGAD 685

Query: 700 RDWSYRGHNTQAEYTNLAPGKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMA 759
            DW      ++  Y  L+ G Y F V  R P  E + A +         WW         
Sbjct: 686 SDWKLLTAQSEVSYYGLSSGTYTFCV--RIPGNEQSMAIYKVTVQPMIPWW--------- 734

Query: 760 GMLFLALAVSLVMWRIRILKRRELYLVEQV 789
           G + LA+++ L++  +R   R+   LV +V
Sbjct: 735 GWVILAISIILIVVLVRYYVRKSAPLVTEV 764