Pairwise Alignments

Query, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  129 bits (325), Expect = 1e-33
 Identities = 178/861 (20%), Positives = 332/861 (38%), Gaps = 110/861 (12%)

Query: 6   LLACCGVQICSVFLLIISSSAYAVVEHISDYFVETWTSTDGLPHNSINSIAQTRDGYLWF 65
           LL+ CG  +    L + +++     EHI         S +GL  N+I S+     G LW 
Sbjct: 20  LLSLCGAPLTGSALPLNAANTQLKFEHIR--------SEEGLNQNTITSLFMDSAGMLWI 71

Query: 66  ATWEGVVRYNGINFQVFDRNPQT-GMVDSGTRTLLPMDNNGLLVAGARGSITHR------ 118
            T +G+  YNG NF +F  +P     +     + +  D  G L  G      +R      
Sbjct: 72  GTQDGLHSYNGYNFNLFIHSPNNPSSISESFISDIIQDAEGYLWIGTFSQGVNRLDLNTG 131

Query: 119 --QSYGWQSFRSAPSLVNGALIDDAQNLWLAIEG----LGV----VVRPYLGNNLYGPDR 168
             + +G +   + P +    ++ +   LW+  +G    L +    + +  LGN++     
Sbjct: 132 TFERFGLEQGLTDPRVTKLNIVGNT--LWIGTQGGLFSLSIKTQRITQVSLGNSVEPHIT 189

Query: 169 WLLTDASVYRLVKNQHGVIFAATDKGLYRFNDWQASAMELPIGRYERINYISISLNQELV 228
            L    + Y L   +    FA +   + R N  Q       +  Y+    I  +  + + 
Sbjct: 190 SLANVENTYLLAGTRASGTFALSSNAITRLNVPQ------DLTAYQ----IKANSTRAIT 239

Query: 229 VATDQGVWINTEEGFQ-SLFVPLEKEVVTLAE--QDRAGNWWIGTVNRGIARLKNQQLQF 285
           +A    +W       Q S+    E ++  L +  Q   G +W+     G+ +L+ +  +F
Sbjct: 240 LALGNQLWHYDLVSHQGSILWQAEDDIPYLKDFIQTPQGQFWVVGPEAGLIQLEREAGRF 299

Query: 286 --------LEPSRGLPYSRVLSWYQDIEGSVWVGTN-AGIMRLRDAP-----FININSDK 331
                   ++    +  + +L   QD  G++W+G + +G+ ++              ++ 
Sbjct: 300 VAAYHKYDMQRPNSISDNNILCLLQDTFGNLWLGGSYSGLNKINTRRQYFQHLFEYTTEL 359

Query: 332 GLVGDYVRTLLPLDDRRVMVGTS----RGLSIIEEGLAH--SALMPQVGARPSILSLA-- 383
               + +RT+    D+ + +GT     + L+   +   H  SA    +G     L+L   
Sbjct: 360 PQQSNNIRTIFRSQDKALWIGTEGAGLKRLAFNAKQYEHYTSAFAKALGKETRHLNLVLR 419

Query: 384 --KADQQGEKVWVGTVQKGLLLWQNGQLRPVLDENNGLPSSE---VRAIVTDPQDNLWIG 438
               D+QG   +      G L   +G+   +    +  P+SE   +R++  D Q  LW+ 
Sbjct: 420 AITQDRQGVLWFASNYGLGRLT-PSGEFTLLKLTQSQDPASEANYIRSLELDAQGQLWVA 478

Query: 439 TSNGIVKRTPQGVLTTYNKDNSPLPD--------DYIMALAVDSEGKLWVGSAVGVAYFD 490
           TS+ + ++     L      + PL D        + ++ L  D    LW+GS  G+   D
Sbjct: 479 TSHALYRKA----LEKDEFTSVPLTDIENFHPTQNLLLILRADGN-TLWIGSLNGLVKLD 533

Query: 491 AQGKIRPVDLTKQEQAQYVFG------FYMESDYVWMATDRGIVRY--RLSDASVSLVGR 542
            Q           E    +            +  VW AT  GI R   +  D       R
Sbjct: 534 MQTGQGQAFYHDPENKNTIINNRIRDILVASNGDVWFATHGGISRLSAQAEDMVFRDYTR 593

Query: 543 AAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQMLAVADGMSTQLEFEHFDEGDGMAT 602
             GLP D  + +L D E H+W SSN G+ KLN            +  +  +F+E +G+  
Sbjct: 594 EQGLPSDTIYALLEDDEHHIWFSSNAGIGKLN-----------PSNGKIINFNEQEGLQA 642

Query: 603 SQANGGTNPASASLPNGELLFATAKGVASIKVQRL-QQLSELRLPVVLESVSFDSEII-- 659
            + NGG     +   +G+L F    G+     + +  Q SE ++ +    ++     I  
Sbjct: 643 LEFNGGVKLKDS---DGDLWFGGINGINRFNPKAIPDQRSEAKVALTAYKIAGKRHTILD 699

Query: 660 -NPDQQYIAAAGTNRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNTQAEYTNLAP 718
            +   + +       VSF    L F  + + ++   LEGFD  W       +  +TN+ P
Sbjct: 700 LSHPPKILMNYDDQLVSFEVTSLDFSYTGKNRFSYYLEGFDNQWHDLPSGNEITFTNINP 759

Query: 719 GKYRFFVSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRIL 778
           G Y   V     Y             ++  +++ +    +  +L L L   +V+WR    
Sbjct: 760 GHYVLHVRHSLEYNSEGSYALLVDLTVKAPFYRSQIAYALYVLLALGLMGWIVLWR---K 816

Query: 779 KRRELYLVEQVALQTQKLRLQ 799
           ++RE     + +++  + RL+
Sbjct: 817 QKREQQQEFETSIRASEERLK 837



 Score = 87.8 bits (216), Expect = 5e-21
 Identities = 60/163 (36%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 801  EKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSHII 860
            E    L+  D LTGL NR  F   L  A S+    +  V++  LD+D FK IND   H I
Sbjct: 1073 EDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHI 1132

Query: 861  GDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPK-QAWGYFEKLRCKIEQVDLSA 919
            GD  + AV+  L   V +   VAR GG+EFTI+  G  K +A     +   K  Q     
Sbjct: 1133 GDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLL 1192

Query: 920  VAPGLNVTVSIGFA-DAQQAESYETVLKLADHALLTAKKLGRN 961
                L ++ SIG +     AE  ++++K AD A+  AK LGRN
Sbjct: 1193 DDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRN 1235