Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., BarA sensory histidine kinase (= VarS = GacS) from Pseudomonas fluorescens FW300-N2E2

 Score =  321 bits (823), Expect = 2e-91
 Identities = 235/680 (34%), Positives = 358/680 (52%), Gaps = 45/680 (6%)

Query: 581  LDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTT 640
            L+  E + +E +L + KEA +A S+ K +FLANMSHEIRTP+N ILG  HL   + L   
Sbjct: 296  LETIEIQNIELDLAR-KEALEA-SRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPR 353

Query: 641  QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEK 700
            Q  Y+  I +SA +LLGIIN+ILDFSK+EAGKL ++ I FNL D+L +   +++  A  K
Sbjct: 354  QLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAK 413

Query: 701  GIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLR 760
             +E +  +    PL L+GDPLRL Q++ NL  NA+KFT +G IV  A +   +E  V LR
Sbjct: 414  QLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLR 473

Query: 761  FAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEE 820
             +++DTGIG++   +  LF AFSQADNS++RQ GGTGLGL ISK+LVE MGG+I V S  
Sbjct: 474  ISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTP 533

Query: 821  GKGSTFEFSVVCGLQDAKMRDISQPVHG--LADKRVLVVDDNDSARHIL-----DSLLTA 873
            G+GS F  S    L+  K RD ++ + G  L  +RV V+++++ AR  L     D  L  
Sbjct: 534  GEGSEFWIS----LRLPKTRDDAEDLPGPPLLGRRVAVLENHELARQALQHQLEDCGLQV 589

Query: 874  MRFNVV-TVSNGFEALSEIQQK-PFDMLFVDWN-MPGMNGIELLTRVKTLGLRGHMKSFL 930
              FN + +++NG     +  Q     +L +  N MP     + +  ++ LG +  +    
Sbjct: 590  TPFNTLESLTNGITIAHQTDQAIDLAVLGITSNDMPPERLNQHIWDLEHLGCKVLVLCPT 649

Query: 931  VTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFA 990
                   +++   +S+L      KP     L  A+         R   +E   +  P   
Sbjct: 650  TEQTLYHLSVPNPHSQLQ----AKPACTRKLRRALSDLVNPRPTRSDPHEPVSSRAP--- 702

Query: 991  GQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDG 1050
               +L V+DN  N  +   LL+D G  V+    G  A++ ++   FDLVLMD+QMP MDG
Sbjct: 703  --KVLCVDDNPANLLLVQTLLEDMGAKVLAVESGYAAVKAVQKETFDLVLMDVQMPGMDG 760

Query: 1051 ITATEHIRANPRWHS------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQV 1104
              +TE +R   +W S      LPIVA+TA+AMA +    LQ+GM+D+L+KPI   +  QV
Sbjct: 761  RQSTEAVR---QWESERHCTPLPIVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQV 817

Query: 1105 LRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEIL 1164
            +  +  ++        S + P  S           +L  +D E+ +    G      ++L
Sbjct: 818  VLKWTGLALRNQSPERSGDAPGGS-----------ELLVLDHEEGLRLAAGKADLAADML 866

Query: 1165 RHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQV 1224
               + S   +  ++   IEA D ++     H L G+    G+  L       E  L+QQ 
Sbjct: 867  AMLLASLEADREAIRQAIEANDHNALIERVHRLHGATRYCGVPQLRAACQRSETLLKQQD 926

Query: 1225 LPSFELLQQAQSLLTQVDDE 1244
              + + L++ +  + ++  E
Sbjct: 927  PKAADALEELERAINRLASE 946