Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  353 bits (905), Expect = e-101
 Identities = 274/901 (30%), Positives = 446/901 (49%), Gaps = 62/901 (6%)

Query: 456  NAEQQRLAERKVLEQSQ---LNQEILDATPN-PMYCLSADGKFLTVNAKFLDLMGLYNNE 511
            NA+ ++    +  E S+   L Q +LDA+    +      G+    N     L+G  N+E
Sbjct: 472  NAQLEQQVSERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSE 531

Query: 512  VIDKEPQEIF--PAEVAERFAAAHQVL-------------TQQQSSQNYEVSLVDYTGVQ 556
            ++      +F  P EVA R A   +                 ++ S+  + + V   G  
Sbjct: 532  MLSGNGPGVFHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTT 591

Query: 557  REMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSH 616
              +L+          ++ G +GI  D+TER     EL  AK +A+A + AK  FLANMSH
Sbjct: 592  VPVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSH 651

Query: 617  EIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVE 676
            EIRTPMNA++G++HL  NT L+  QR+ +T++  + + LLGIINDILD +K+EAG++ +E
Sbjct: 652  EIRTPMNAVIGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLE 711

Query: 677  RIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVK 736
               F+   +LD +  + + +AQEKG+ F +++   +P  LIGD LR+ Q+++NL GNA+K
Sbjct: 712  HNPFSPRQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALK 771

Query: 737  FTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGT 796
            FTS G + ++      +     LRF+V+DTG GI  D L  LF  F+QAD S TR++GGT
Sbjct: 772  FTSVGGVDVTVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGT 831

Query: 797  GLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLV 856
            GLGLS+ + L E MGG+I V SE G GS F   +   +  + +    +P    +   V++
Sbjct: 832  GLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELPFQISQSDL----EPSGPGSSLEVML 887

Query: 857  VDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPF------DMLFVDWNMPGMNG 910
            + D+  +   L  L   + + V +++   +  + +Q++        D+L VDW  P +  
Sbjct: 888  LSDDAQSSMALQRLCRGLGWRVASLTGEHDLRTALQERNHVNAALPDVLLVDWQQPQVEE 947

Query: 911  IELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYG 970
            ++ L     L +       LVT+      +  E   LVD +++KP++ S L +A+  +  
Sbjct: 948  VQQLIEATPLPV------ILVTS----SEIRAELHPLVDKVLLKPLDSSALFNAV--NAC 995

Query: 971  IEHVRHKTNEAHHNSRPN------FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHG 1024
            I   +  T      +R +       +G  LLLV+D+E+N EVA  LLQ  G  V   ++G
Sbjct: 996  IARYQGSTERVIQATRMDTSMTLWLSGLHLLLVDDSEINLEVASLLLQQQGAVVQTCSNG 1055

Query: 1025 QEALERLEHAD--FDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIER 1082
              ALERL      FD VLMD+QMP MDG  AT  +R+      LP++A+TA A+A +  +
Sbjct: 1056 LLALERLRQTPDFFDAVLMDVQMPEMDGYEATRRLRSELGLTRLPVLALTAGALAEERRQ 1115

Query: 1083 CLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLT 1142
               AGM+D L+KP++     + +R  ++       +  +  + +++  A       P + 
Sbjct: 1116 AELAGMDDFLTKPLDPAALIRAVRRAVERVRGAPLAVGTLLQEASTGSAW------PVIE 1169

Query: 1143 GVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRV-AHTLKGSA 1201
            G+D ++   R+G +   +   LR F         S + L  A+     T    H L+GSA
Sbjct: 1170 GIDTQEVAARLGNDVPLFLSSLRRFFSEFAAFGESESVLARARQNPDQTMADLHKLRGSA 1229

Query: 1202 ANLGLEALAQLAAEMEQSLEQQVLPSFELLQQAQSLLTQVDDELSAWEHQHKEPLLAENL 1261
              LG   +   A + E  L     P  + ++   +    + +     E +   P +  + 
Sbjct: 1230 LLLGATQVGLHAGQAETLLRNAADPE-QAVRALSAAFRSLQERTPVLEERPLAPRIDADP 1288

Query: 1262 DWGLW-YQQLQQAINDYDVTALSLSKSIRQVSQWDSAQQA---ALISAIEDFDFEQAKAL 1317
            D        L++ + ++D+ AL     +  V+  + A QA    L   IE  +FEQA  L
Sbjct: 1289 DVSRQALSTLRELLENHDIAALD-QFPLAAVALQELAGQALVEQLWQTIEGLEFEQALHL 1347

Query: 1318 L 1318
            L
Sbjct: 1348 L 1348