Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  266 bits (681), Expect = 5e-75
 Identities = 182/541 (33%), Positives = 291/541 (53%), Gaps = 49/541 (9%)

Query: 587  KEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVT 646
            +E  D L +A+E A+A +QAK  FLANMSHE+RTP+NAI+G + + +    D  + + + 
Sbjct: 458  RETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELL 517

Query: 647  ----RINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGI 702
                +IN + K+LL +IN ILD SK+EAG++ +    F+L ++++ V +++    ++   
Sbjct: 518  PDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQN 577

Query: 703  EFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFA 762
            + L+D    I L +  D  +L Q ++NL  NA KFT QG I L  +V+   +Q V   F 
Sbjct: 578  QLLVDCPADIGL-MTADVTKLRQTLLNLLSNASKFTHQGTIQL--QVAAQGDQVV---FK 631

Query: 763  VKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGK 822
            V D+GIG++ +++D +F+AF+QAD+S TR++GGTGLGLSIS+  +E+MGG+ITV S  G+
Sbjct: 632  VVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGE 691

Query: 823  GSTFEFSVVCGLQDAKMRDISQPVHGLADKR--------------VLVVDDNDSARHILD 868
            GSTF  ++   +Q  +      PV  L D+               VLVVDD  SAR +L 
Sbjct: 692  GSTFTITLPRQVQPPQSIPAVDPV--LTDEAIATATEQEDQNQPVVLVVDDEPSARELLR 749

Query: 869  SLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKS 928
             +L    + VVT + G E L   Q+    ++ +D  MP ++G  +LT +K   +   +  
Sbjct: 750  RMLEKEGYRVVTAAGGAEGLQRAQELRPALITLDLMMPQVDGWSVLTALKADPMLAEIPV 809

Query: 929  FLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPN 988
             +V+          E   L  AL           D +      + +R       H  R  
Sbjct: 810  VMVSMV--------EGRSLSYAL--------GAADYLHKPIDRDQLRRILERYTHPDRQP 853

Query: 989  FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADF--DLVLMDMQMP 1046
             A    L++ED+ VN+ +   LL+  G  V  AN GQ+ L  LE  +   DL+L+D+ MP
Sbjct: 854  LA----LVIEDDPVNRSLLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLILLDLMMP 909

Query: 1047 VMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSK-PIEVDKFYQVL 1105
             MDG    + +RAN  W +LP++ +TA  +     + LQ  ++  ++K  + +D+    +
Sbjct: 910  QMDGFAFVDALRANGNWQTLPVIVVTAKDLTEQDRQRLQGRVSQVIAKGNLAIDRLLAEI 969

Query: 1106 R 1106
            R
Sbjct: 970  R 970



 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 994  LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITA 1053
            +L+V+D    +E+   +L+  G  VV A  G E L+R +     L+ +D+ MP +DG + 
Sbjct: 735  VLVVDDEPSARELLRRMLEKEGYRVVTAAGGAEGLQRAQELRPALITLDLMMPQVDGWSV 794

Query: 1054 TEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108
               ++A+P    +P+V +   +M          G  D+L KPI+ D+  ++L  +
Sbjct: 795  LTALKADPMLAEIPVVMV---SMVEGRSLSYALGAADYLHKPIDRDQLRRILERY 846