Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  424 bits (1091), Expect = e-122
 Identities = 268/672 (39%), Positives = 390/672 (58%), Gaps = 35/672 (5%)

Query: 455  QNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE--- 511
            ++AEQ RL+E +           +DA  + ++    D + +  N  +  ++G   NE   
Sbjct: 573  ESAEQLRLSEERY-------HLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPA 625

Query: 512  VIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRAD 571
            ++      I P +         Q L     +   E  +   TG    ML          D
Sbjct: 626  LLSTIDSLIHPDDRIRVQEYREQYLKDPIGAYEIEFRMRAKTGQYHWMLSRGRVVEFTQD 685

Query: 572  -KVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
             +   +VG   D+T  K  E  L +AK+ A+  +  K +FLANMSHEIRTPMNAI+GM  
Sbjct: 686  AQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQ 745

Query: 631  LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVT 690
            LA  T L   Q+ Y+ + + SA++LL IINDILDFSK+EAGKL +E++ F LD VLD+  
Sbjct: 746  LAGRTSLTEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSL 805

Query: 691  AVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVS 750
             + +L+AQEKGIE L+       + L GDPLRLGQV++NL  NAVKFT  GEI L     
Sbjct: 806  DLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDV 865

Query: 751  QLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELM 810
               + ++TL+F V+DTGIGI++++ D LFDAF+QAD S TR+YGGTGLGLSISK LV +M
Sbjct: 866  GERDHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMM 925

Query: 811  GGQITVHSEEGKGSTFEFSVVCGL-QDAKMRDISQPVHGLADKRVLVVDDNDSARHILDS 869
            GG + V SE G GSTF F+V   + ++AK+  +  P   LA  R LVVDDN +A  I  S
Sbjct: 926  GGTMQVESEPGVGSTFSFTVSFEIAEEAKVVPMVVP-ERLASLRTLVVDDNPTALQIYSS 984

Query: 870  LLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKS- 928
            ++    F V T S G EAL ++ ++  D++ +DW MP M+GI+++  +  +   G + + 
Sbjct: 985  VMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGIQVIDAIDEMVAEGKLAAR 1044

Query: 929  ---FLVTAYGRE---INLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVR-----HK 977
                ++TAY  E   ++LD +    V A++ KP   S+L D I+ ++     +       
Sbjct: 1045 PVIIIMTAYAAEPLKVDLDSDR---VFAMLQKPFKASSLFDEIIRAFAPPAPKALPAPPV 1101

Query: 978  TNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFD 1037
             +E  H          +LLVEDN +NQ+VA  LL+  G  V VA++GQ +LE +    +D
Sbjct: 1102 EDEGEHQG-------VVLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYD 1154

Query: 1038 LVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIE 1097
             +LMD+QMPVMDG+TA   +R    +  LPI+AMTA+AM+ D E+ L AGMN H++KPI 
Sbjct: 1155 AILMDIQMPVMDGLTAATELRKRYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIV 1214

Query: 1098 VDKFYQVLRHFL 1109
            +++ ++ L H++
Sbjct: 1215 LNELFETLSHWI 1226



 Score = 42.4 bits (98), Expect = 3e-07
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 464 ERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPA 523
           ER+  E + L + +LD+ P  +     +G +L  N     ++G    E+I    +E+   
Sbjct: 451 ERREREYALL-RSLLDSIPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSP 509

Query: 524 EVAERFAAA-HQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLD 582
           E   R  A   QVLT+++  +  E   ++  G    +   +  F +R  ++ G++ +  D
Sbjct: 510 EQGSRIRAEDEQVLTERKPLRYQEK--IELAGKPVLLDTLKLPFYNRRGELMGLIAVWRD 567

Query: 583 MTERKEMEDELRKAKE----AADAMSQAKGDFLANMSHEIRTP 621
           +T   E  ++LR ++E    A DA+     D+  +    I  P
Sbjct: 568 VTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNP 610