Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1141 a.a., putative integral membrane sensor protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  267 bits (683), Expect = 4e-75
 Identities = 165/439 (37%), Positives = 252/439 (57%), Gaps = 18/439 (4%)

Query: 544 NYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAM 603
           N E  ++   G  R M+ Y     D+      + G ++D+TER++ME EL +AK+ A+A 
Sbjct: 473 NLEYRILHRNGDIRWMMEYGNHVRDQQSGEMYLDGFIMDITERRQMEQELLEAKDIAEAA 532

Query: 604 SQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDIL 663
           + A+  FLANMSHEIRTPMNAI+G + + L +  +  + +++  IN +AK+LL ++ND+L
Sbjct: 533 ATARAAFLANMSHEIRTPMNAIIGFSDILLESQFEPEKHRHLKTINHAAKSLLHLLNDVL 592

Query: 664 DFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRL 723
           D +K++ GKL +E  DF+L   LD V + + L+A+ KG++  M++ P +     G P R+
Sbjct: 593 DSAKLDKGKLELEVRDFSLVQELDEVISTLWLQARRKGLQLTMEVSPKLLPCYAGSPERI 652

Query: 724 GQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFS 783
            QV+ NL  NAVKFT +G++ L+    Q N     + F V+DTGIG++ ++LD +FD F+
Sbjct: 653 RQVLTNLVSNAVKFTEKGQVRLTVNPGQGNH----VDFVVEDTGIGMSPEQLDKIFDPFT 708

Query: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSV-----VCGLQDAK 838
           QAD S++R++GGTGLG +ISKQLVELMGG I+  SE GKGS F FS+     VC      
Sbjct: 709 QADASMSRRFGGTGLGTTISKQLVELMGGHISAGSELGKGSRFCFSLPLNPGVCDELVPL 768

Query: 839 MRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKP-FD 897
              +S P        VLVVDD      +L +LL      V+T S+G +AL+ +  +P  D
Sbjct: 769 ENHVSLP-----PMTVLVVDDIAQNLELLSTLLGRDGHRVITESDGQQALARMASEPAID 823

Query: 898 MLFVDWNMPGMNGIELLTRVKTLGLR---GHMKSFLVTAYGREINLDGENSKLVDALIVK 954
           ++ +D  MP M+G+      +    R    H+    +TA   E +        +D    K
Sbjct: 824 LVLMDVQMPVMDGLSASRARRDKEQREGLTHLPIIALTASVLEDDRTAARQAGMDGFANK 883

Query: 955 PVNPSNLLDAIVTSYGIEH 973
           P++   L   I    G++H
Sbjct: 884 PIDYPLLCAEIARVLGLKH 902



 Score =  101 bits (252), Expect = 3e-25
 Identities = 90/339 (26%), Positives = 152/339 (44%), Gaps = 32/339 (9%)

Query: 993  SLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDGI 1051
            ++L+V+D   N E+   LL   G  V+  + GQ+AL R+      DLVLMD+QMPVMDG+
Sbjct: 778  TVLVVDDIAQNLELLSTLLGRDGHRVITESDGQQALARMASEPAIDLVLMDVQMPVMDGL 837

Query: 1052 TATEHIRANPRWHSL---PIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHF 1108
            +A+   R   +   L   PI+A+TA+ +  D     QAGM+   +KPI+       +   
Sbjct: 838  SASRARRDKEQREGLTHLPIIALTASVLEDDRTAARQAGMDGFANKPIDYPLLCAEIARV 897

Query: 1109 LQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFI 1168
            L +        H+P + +  +     L+D  +  G+DL        G++  Y+  L  F+
Sbjct: 898  LGLK-------HAPIEAATPQSQPGKLID--EKKGMDL-------WGSRDSYYRQLALFV 941

Query: 1169 DSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSF 1228
            + Q ++   ++    A DW +  + AH LKG +ANL L  L++   ++E  L        
Sbjct: 942  EEQAEQFERLSSQCHACDWPALKQTAHGLKGVSANLSLTRLSRNLEKLESLLASHPEQCA 1001

Query: 1229 ELLQQAQSLLTQVDDELSAWEHQHK---------EPLLAE---NLDWGLWYQQLQQAIND 1276
              +   Q +   V  E+ +  +            EPL A    + +       L+Q   D
Sbjct: 1002 LFVAPIQQVFAAVKAEVQSSGYGEAASSGCSALGEPLTAPEKYSAELMPLLTSLRQQAGD 1061

Query: 1277 YDVTALSLSKSIRQVSQWDSAQQAALISAIEDFDFEQAK 1315
              +    L K +        +Q  A+  A+ DF+F +A+
Sbjct: 1062 NALDEPLLEKLLSFEEGACGSQIRAIYQALNDFEFSEAE 1100