Pairwise Alignments
Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Score = 528 bits (1359), Expect = e-153
Identities = 321/803 (39%), Positives = 466/803 (58%), Gaps = 23/803 (2%)
Query: 498 NAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQ-QQSSQNYEVSLVDYTGVQ 556
N +F+ +G+ ++ + K+ ++ E +Q L + +Q S + E ++D G
Sbjct: 927 NGQFVSDLGISSDSLKRKQLADLMHPEDRALATGLYQALAESEQGSISGEWRMLDGDGEL 986
Query: 557 REMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSH 616
M V + + +V + ++T K + DEL AKE ADA +QAK DFLANMSH
Sbjct: 987 MWMAVIASVLEEGDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSH 1046
Query: 617 EIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVE 676
EIRTPMNAI+GM+ L L T LD QR YV +I ++K+LLGIINDILDFSK+EAGKL++E
Sbjct: 1047 EIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIE 1106
Query: 677 RIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVK 736
+ F LD +L+++ + S+KA +K +E L + P +P L GDPLRL QV++NL NA+K
Sbjct: 1107 VVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIK 1166
Query: 737 FTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGT 796
FT +GE++LS +E QV L+FAV+D+GIG+ ++ LF +FSQAD S TR+YGGT
Sbjct: 1167 FTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGT 1226
Query: 797 GLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLV 856
GLGL+I KQLVELMGG+I V S+ G GSTF F+V + ++ Q + G+A VLV
Sbjct: 1227 GLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVSVKVAQNAQLNVEQELEGMA---VLV 1283
Query: 857 VDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTR 916
VDDN +AR IL + L +M F+V + +G EAL + ++ + + +DW MP M+G E R
Sbjct: 1284 VDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTETAAR 1343
Query: 917 VKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIE---H 973
++ L+ +V+A+ +D ++ I KP++ S LLD I+++ G +
Sbjct: 1344 MRE--LKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKP 1401
Query: 974 VRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEH 1033
VR K G+ +LLVEDNE+NQEVA L+ G+ + +A++GQ ALE+L
Sbjct: 1402 VRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQ 1461
Query: 1034 ADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLS 1093
FDLVLMD QMPVMDG AT +R P LP+VAMTANAMA D E CL AGMNDH++
Sbjct: 1462 QSFDLVLMDCQMPVMDGYQATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIA 1521
Query: 1094 KPIEVDKFYQVLRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRI 1153
KPIEV YQ L LQ ++ S + +A+ + +L P+ +D+++ + +
Sbjct: 1522 KPIEVGILYQTL---LQYLCPEAKGLESADADAAADQEVTSLTSWPEHEDLDIDRGLQLV 1578
Query: 1154 GGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLA 1213
+++ Y IL F+ SQ + + A R+AHTLKG A NL + L + A
Sbjct: 1579 QNSERLYRRILERFVTSQAQAGKKIRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEA 1638
Query: 1214 AEMEQSLEQQVLPSFELLQQAQSLLTQVDDELSAW-----EHQ---HKEPLLAENLDWGL 1265
++E L Q E L+ ++ L + + W E Q EPL A+ L L
Sbjct: 1639 RQLEAKLAQGEACEAE-LEAVETRLVTIVAAIERWMTEGVEEQGVESGEPLSADALKEVL 1697
Query: 1266 WYQQLQQAINDYDVTALSLSKSI 1288
L + D D A+S +S+
Sbjct: 1698 --NTLVTQLEDADADAVSTLESL 1718
Score = 35.0 bits (79), Expect = 6e-05
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 439 WLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCL----SADGKF 494
W L+D++ + +LA+ ++ + + + I ++ P+ +Y L D +F
Sbjct: 750 WFDGSLNDIT----------ESKLAQERIEQSREQLETITESVPSTVYQLVWRSERDRRF 799
Query: 495 LTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTG 554
+++ + +G + NEV+D + + V E Q+L + Q + +
Sbjct: 800 TFLSSAAMATLGFHRNEVLDNF-ELVAERIVEEDRGEIIQMLAGRHGMQWTKAFRYHFPS 858
Query: 555 VQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANM 614
+ L A S + D + G L+D++ RK ME EL +++ A+ G + N+
Sbjct: 859 GELRWLEAGARGSKQQDALVW-NGYLMDISGRKRMETELAQSEAHFRALFDNAGIGIVNL 917