Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  318 bits (814), Expect = 2e-90
 Identities = 222/681 (32%), Positives = 353/681 (51%), Gaps = 42/681 (6%)

Query: 580  LLDMTERKEMED-ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLD 638
            L +  E+ E+++  L +AK+ A   S+ K +FLANMSHE+RTP+N ++G A   L TPL 
Sbjct: 284  LRETLEQIEIQNIALDRAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLH 343

Query: 639  TTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698
            ++Q +Y+  I  SA +LL IINDILDFSK+EA K+ +E + F L   L++   +++  A 
Sbjct: 344  SSQMEYIKTIERSATSLLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAH 403

Query: 699  EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVT 758
             KG+EF++D+D ++P  L GD +RLGQVM NL GNA+KFT +G + L   ++ L +  +T
Sbjct: 404  AKGLEFVVDVDANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLT 463

Query: 759  LRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQL-VELMGGQITVH 817
            LR  V DTGIGI  ++ + LF AF QAD+SI+R+YGGTGLGL I+K+L V++MGG+I  H
Sbjct: 464  LRCEVTDTGIGIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFH 523

Query: 818  SEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFN 877
            SE GKGS+F F+V   L    + D + P+  L    VL+ +     R  +   L      
Sbjct: 524  SEVGKGSSFWFTVPLQLSPFPVHD-TLPLEKLIGHSVLLFEPRKLTRESIARKLKDWHMM 582

Query: 878  VVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLV--TAYG 935
            V   SN  E    +  + +D + +          E L R     ++ H  S L+      
Sbjct: 583  VTLASNEDELERHLDDRHYDAILLSGQ--SCESCEDLQR-HLSRVKDHTGSLLLLNDCLD 639

Query: 936  REINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSLL 995
             E+    E    VD ++  PV+   L   ++     ++   K   A   S  +    ++L
Sbjct: 640  PEVYTQ-EMEPFVDLVLQLPVSELKLAQNLIFPPVKKNAAPKPALATKPSARH--PLNVL 696

Query: 996  LVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATE 1055
             V+DN  N ++   LL++   NVV  + G +A+   +   FDL+ MD+QMP  DG+TAT 
Sbjct: 697  AVDDNLANLKLIDTLLKELVANVVAVSSGDQAVALAKSRSFDLIFMDIQMPGTDGVTATR 756

Query: 1056 HIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQVSDEQ 1115
             IR +    + PI+A+TA+A+  + ER   +GM+ +L KPI+      V+  +L      
Sbjct: 757  LIRQDSLNRNTPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVISRWLTRPKFT 816

Query: 1116 SFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDEL 1175
             F S++ N                       E  + +    +    ++L+  ++S    +
Sbjct: 817  HFDSNTLN----------------------WELCLSQANQKEDLAIDMLKMMLESLPGTV 854

Query: 1176 NSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSL---------EQQVLP 1226
            N +   +   D  S     H L G++   G+    +L  ++E +L         E ++L 
Sbjct: 855  NDIELAMARSDNESMLYTVHKLHGASCYCGVPTTQKLCQQIESALKGGADVADVEPEILE 914

Query: 1227 SFELLQQAQSLLTQVDDELSA 1247
              + L + +S  TQV  ++SA
Sbjct: 915  LLDELTKVESAATQVISQMSA 935