Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  423 bits (1087), Expect = e-122
 Identities = 295/944 (31%), Positives = 468/944 (49%), Gaps = 96/944 (10%)

Query: 453  LSQNAEQQRLAERKVLEQSQ---LNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509
            LS  A+ ++L   +  +  +   L + ILDA    +     +G     N     L+G   
Sbjct: 364  LSAKAKLEQLVHERTSQLEKMGVLQRTILDAASYAIIATDTEGIITVFNPSAERLLGFTA 423

Query: 510  NEVIDKEPQEIF--PAEVAERFAAAHQVL--------------TQQQSSQNYEVSLVDYT 553
             E++  +   IF    EV  R     + L              +++        + V  +
Sbjct: 424  KEMVGLQTPAIFHLEEEVVRRATQLSEELGTKIEPGFDAFVAKSRRGKEDTNNWTYVSKS 483

Query: 554  GVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLAN 613
            G +  + +   +       + G +GI  D+TE+ + E EL  A+E A   S+AK DFLAN
Sbjct: 484  GARITVKLSVTTLYGEDKDIMGYLGIAYDLTEQLKREQELADAREQALQASRAKSDFLAN 543

Query: 614  MSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKL 673
            MSHEIRTPMNA+LG+  + L T L    R Y+ +  ++AK+LL ++NDILDFSK+EAG++
Sbjct: 544  MSHEIRTPMNAVLGLLQMTLQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRI 603

Query: 674  NVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGN 733
             +ER  F+L  +L ++ +++S + Q+K IE +  + P +P  LIGD LRL Q+++N+  N
Sbjct: 604  ELERQGFSLQQLLGDMGSILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTN 663

Query: 734  AVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQY 793
            A+KFT +G+I+        ++    L   ++D+GIG+  ++   +F  FSQAD+SI+R+Y
Sbjct: 664  AIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRY 723

Query: 794  GGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKR 853
            GGTGLGL+I+++LV LM G+I V S  G GSTF   V  G    K R    P    +  R
Sbjct: 724  GGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFTIDVQLGFDATKYR----PGARFSGVR 779

Query: 854  VLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQ---KPFDMLFVDWNMPGMNG 910
            VL+V+DN ++R +   LL  +   V  ++NG  A+  I++     FD+L  DW +PG++G
Sbjct: 780  VLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMAPDSFDVLLADWQLPGLDG 839

Query: 911  IELLTRVKTLGLRGHMKSFLVTAYGREINLDGE---NSKLVDALIVKPVNPSNLLDAIVT 967
            +EL + ++ L         ++     +  L+ +     +  DA ++KPV         + 
Sbjct: 840  LELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEFDATLIKPVTRE------MV 893

Query: 968  SYGIEHVRHKTNE------AHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVA 1021
            S  ++ V  + N       +H    P+  G+ LLLVEDN  N+ VA  LL   G  V+ A
Sbjct: 894  SRCLQSVLERHNNDGLDMLSHLPLAPSLVGRRLLLVEDNATNRLVATSLLGQLGAEVIEA 953

Query: 1022 NHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIE 1081
              G +AL+ L    FDLVLMD+QMP MDG   T  IR       LPI+AMTANAM  D +
Sbjct: 954  VDGFQALKLLSRQQFDLVLMDIQMPGMDGYQTTRKIRNELMLTDLPIIAMTANAMPEDKQ 1013

Query: 1082 RCLQAGMNDHLSKPIEVDKFYQVLRHFLQ------------VSDEQSFSSHSPNKPSASK 1129
             C  AGMN H+SKP E+D+    L  +L               DE + +      P A+ 
Sbjct: 1014 ACRDAGMNCHISKPFEIDEVATKLLQYLSPPEHPMRSSEALAEDESTSAGSLTAAPEAAV 1073

Query: 1130 PAMN--------ALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGL 1181
              M+        ++    Q  G+DLE+A  R+G       E+    ID  + +++     
Sbjct: 1074 TEMHNPKDALPQSVRQFSQANGLDLEEACNRLGDR-----ELFTRVIDQFLLDISQAQRC 1128

Query: 1182 IEAQD--WSSATRVAHTLKGSAANLGLEALAQLAAEMEQS----LEQQVLPSFELLQQAQ 1235
            +   +     A    H+LK  AA+ G  ALA +    E +     E +V P   +L+   
Sbjct: 1129 LSVPEIAMKDARIQYHSLKSGAASCGFTALALVLRNAEANCRPEAELRVAPDEAVLRALP 1188

Query: 1236 SLLTQVDDELSAWEHQHKEPLLAENLDWGLWYQQ--------------LQQAINDYDVTA 1281
              ++Q+         +  +PLL+  +  G    Q              LQQ ++  D+ A
Sbjct: 1189 EAISQL---------EQLQPLLSPQVQSGAAASQNLLPQAELSAQLITLQQLLSQSDMAA 1239

Query: 1282 LSLSKSIRQ-VSQWDSAQQAALISAIEDFDFEQAKALLASYPQL 1324
            L L  ++R+ +++ D+A    L+ A  + DF Q+  LL+++  L
Sbjct: 1240 LDLLANLREPLAELDAALTGKLVDAANNLDFNQSLVLLSAFEGL 1283