Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  528 bits (1360), Expect = e-153
 Identities = 319/804 (39%), Positives = 464/804 (57%), Gaps = 42/804 (5%)

Query: 542  SQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAAD 601
            S   E+ L++  G  R M V     SD+  +    V  + D++  K + +EL +AK+ AD
Sbjct: 975  SVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSEELTQAKDVAD 1034

Query: 602  AMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIIND 661
            A S+AK DFLANMSHEIRTPMNAI+GM+ L L T LD  Q+ YV +I+ ++K+LLGIIND
Sbjct: 1035 AASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRASKSLLGIIND 1094

Query: 662  ILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPL 721
            ILDFSK+EAGKL++E + F LD +L++++ + S+KA +K +E L  + P+IP  L+GDPL
Sbjct: 1095 ILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAPNIPRHLVGDPL 1154

Query: 722  RLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDA 781
            RL QV++NL  NA+KFT QGE++LS       ++++ L+F+V+D GIG+ +++   LF +
Sbjct: 1155 RLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGIGLTEEQRGKLFQS 1214

Query: 782  FSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD 841
            FSQAD+S TR+YGGTGLGL+I KQLVELMGG+I V S+ G GSTF FSV   + D ++  
Sbjct: 1215 FSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFSVRFKVADNQLIK 1274

Query: 842  ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFV 901
            ++Q + G+   R+LV DDN +AR IL S L +M F V TV +G EALS  Q+  + +  +
Sbjct: 1275 VAQELEGM---RILVADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQETDYGVALI 1331

Query: 902  DWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIVKPVNPSNL 961
            DW MP M+G+E   R+ +       K+ +V+A+     +D      +   I KP++ S L
Sbjct: 1332 DWRMPEMDGLETARRLLS-ERTNPPKTLIVSAHADGDFIDKAEQAEISGYITKPISASRL 1390

Query: 962  LDAIVTSYGIE---HVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNV 1018
            LD I+++ G +    VR K +E          G+ +LLVEDNE+NQEVA   L+  G+ +
Sbjct: 1391 LDGIMSALGKQGAMPVRRKGSEVSPALLAQLKGKRILLVEDNEMNQEVASEFLEQVGVIL 1450

Query: 1019 VVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAI 1078
             +A +GQ ALE+L    FDLVLMD QMPVMDG  AT  +R  P    LP++AMTANAMA 
Sbjct: 1451 SIAENGQVALEKLAMQSFDLVLMDCQMPVMDGYQATAELRKRPELADLPVIAMTANAMAG 1510

Query: 1079 DIERCLQAGMNDHLSKPIEVDKFYQVLRHFL----QVSDEQSFSSHSPNKPSASKPAMNA 1134
            D E CL+AGMNDH++KPIEV   Y+ L  +L    QV +E S      +   A       
Sbjct: 1511 DKEMCLRAGMNDHIAKPIEVSLLYKTLLEYLGDDSQVIEETSTEQTDQHSQDAY------ 1564

Query: 1135 LLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVA 1194
                PQ   +D+++ +  +  + + Y  I   F   Q      +           A R A
Sbjct: 1565 ---WPQHPALDIDKGLQLVQNSARLYRRIFERFYTGQSRCAELIATAQREGKQEEAVRYA 1621

Query: 1195 HTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSF-ELLQQAQSLLTQVDDELSAWEHQ-- 1251
            HTLKG A NL    L  LA ++EQ+L   +     E L Q   LL  +   +  W  Q  
Sbjct: 1622 HTLKGVAGNLCCPELVALAKQVEQTLSDSIEADVTEALTQMGELLDSLCTTIGDWLSQTG 1681

Query: 1252 ----------------HKEPLLAENLDWGLWYQQLQQAINDYDVTALSLSKSIRQVSQWD 1295
                               P+ A+ LD  +  ++L + + + D  A+   ++IR      
Sbjct: 1682 AETLPQEDGAEAGATADAPPMSAQELDAAI--KELLKMLEEADAEAVEKLQAIRDRLPTS 1739

Query: 1296 SAQQ-AALISAIEDFDFEQAKALL 1318
             A + A +++ +  + F++A  L+
Sbjct: 1740 LANKIAPVLNMVNAYQFDEAIELV 1763



 Score = 37.4 bits (85), Expect = 1e-05
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 41/245 (16%)

Query: 455 QNAEQQRLAERKVLEQSQLNQEILDATPNPMYCL---SADGKFLT-VNAKFLDLMGLYNN 510
           Q+  Q +LA+ K+ +  Q  + I ++ PN +Y L   + D ++ T ++   +  +G + +
Sbjct: 756 QDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRWIANDQRYFTFLSRACITTLGFHRD 815

Query: 511 EVI---DKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDY---TGVQREMLVYEA 564
           +++   D     I  +E A    A    L+ + +S    +    Y   TG QR +     
Sbjct: 816 QLLANFDLVADCIIESERARIIRA----LSGESASGLKWIEEFRYQHPTGEQRWLQA--G 869

Query: 565 SFSDRADKVNGIV--GILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANM-------- 614
           +  DR D    IV  G L+D++ERK+M+ EL K +    A+    G  + N+        
Sbjct: 870 ARGDRQDD-GSIVWNGYLMDISERKQMDRELAKREAHFRALFDNAGIGIVNVDDRGVILD 928

Query: 615 -----SHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKME 669
                S  ++ P+  + G        P    + K       S K+L+G   D  D  K+E
Sbjct: 929 CNEQFSQYLQLPIERLKGSLFFDYQDPEQGLEAK------NSFKHLMG---DGADSVKLE 979

Query: 670 AGKLN 674
              LN
Sbjct: 980 IRLLN 984