Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score =  340 bits (873), Expect = 3e-97
 Identities = 234/685 (34%), Positives = 369/685 (53%), Gaps = 50/685 (7%)

Query: 580  LLDMTERKEMED-ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLD 638
            L +  E+ E+++ EL  AK+ A   S+ K +FLANMSHE+RTP+N ++G A   L TPL 
Sbjct: 275  LRETLEQIEIQNVELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLH 334

Query: 639  TTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQ 698
             +Q+ Y+  I +SA NLLGIINDILDFSK+EAGK+ +E + F L +V+D+  ++++  A+
Sbjct: 335  ASQQDYIKTIEKSATNLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAK 394

Query: 699  EKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVT 758
            EK +E ++DI+P I   + GD LR+ QV+ NL GNA+KFT  G + L  R++    ++V 
Sbjct: 395  EKDLELVVDIEPSINDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVN 454

Query: 759  LRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHS 818
            +R  + DTGIGI +     LF AF QAD+SI+R++GGTGLGL I+K+L+  MGGQI   S
Sbjct: 455  VRCEITDTGIGIDKPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCIS 514

Query: 819  EEGKGSTFEFSVVCGLQDAKMRDISQPVH--GLADKRVLVVDDNDSARHILDSLLT--AM 874
              GKGSTF F++   L       ISQP+    L DK VL+ +  + +R + +SLL+   M
Sbjct: 515  APGKGSTFWFTLPLKLSP---YPISQPLETDNLIDKTVLLFEPRELSRKVHESLLSHWGM 571

Query: 875  RFNVVTVSNGFEALSEIQQKPFDMLFVDWN--MPGMNGIELLTRVKTLGLRGHMKSFLV- 931
            +   +T +     ++  + + FD   +  N      N + +L ++  +        +L  
Sbjct: 572  QNISITTAEDLARVAGEEGRHFDYAIISCNDLASSPNLLNVLNKIAKI---SDYTLYLCS 628

Query: 932  -TAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFA 990
             T    +++L   N   VD ++  PV    L   ++  +  ++      EA   ++    
Sbjct: 629  STDSAAKMSLIQPN---VDKVMQAPVGERALAVTLINPHRAQYEAMPFQEAVKETQER-E 684

Query: 991  GQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDG 1050
              S+L V+DN  N ++   LL++    V V ++GQEA+E  +   FDL+ MD+QMP  DG
Sbjct: 685  PMSVLAVDDNPANLKLIKTLLKELVTQVTVTDNGQEAVEIAKAKSFDLIFMDIQMPGTDG 744

Query: 1051 ITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110
             +AT+ IR +    + PIVA+TA+A+A + ER  Q+GM+ +L KPI+      V+  +  
Sbjct: 745  FSATKQIREHSLNRNTPIVAVTAHAIAEERERIDQSGMDGYLPKPIDEAALKSVISRWKT 804

Query: 1111 VSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDS 1170
                  F  H+ N           L    Q T + L               E+L+  +DS
Sbjct: 805  RPQFTHFDQHTLNWDL-------CLTQANQKTSLAL---------------EMLQMLVDS 842

Query: 1171 QVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQ-------- 1222
              +    ++G +E QD  +     H L G++   G+    +L  E+EQSL+Q        
Sbjct: 843  LPETREHISGALERQDSQAMVSHVHKLHGASCYCGVPTTQRLCREIEQSLKQNASVDLVE 902

Query: 1223 -QVLPSFELLQQAQSLLTQVDDELS 1246
             ++L   + L + +S   QV  +LS
Sbjct: 903  PEILELLDELSKVESAANQVIAQLS 927



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 279 TQKAYGELQRFIDSLNVVFHHISEQLSFNTLVKDFNIIIRNH--------PTTEALCNQV 330
           T  A   LQ  +DSL     HIS  L         + + + H        PTT+ LC ++
Sbjct: 829 TSLALEMLQMLVDSLPETREHISGALERQDSQAMVSHVHKLHGASCYCGVPTTQRLCREI 888

Query: 331 TQFLLHHFPVELI 343
            Q L  +  V+L+
Sbjct: 889 EQSLKQNASVDLV 901