Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1171 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  281 bits (718), Expect = 3e-79
 Identities = 203/660 (30%), Positives = 350/660 (53%), Gaps = 46/660 (6%)

Query: 588  EMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTR 647
            E+E ++    +     S  K  F++N+SHE+RTP+N I+G  +L     L   Q +Y+  
Sbjct: 492  ELEKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKDSLTERQARYLEM 551

Query: 648  INESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMD 707
               S   L  +IND+LD SK+EAGKL+++   FN  +++++V + +++KAQEKGIEF++D
Sbjct: 552  AEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVID 611

Query: 708  IDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTG 767
            +       +  DP R+ Q++ NL  NA+KFT  G I + A        ++     V DTG
Sbjct: 612  VVDLRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRAHSRLRETGELEFICEVSDTG 671

Query: 768  IGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFE 827
            IGIA++    LF AFSQA +SI  QYGGTGLGLSI K+L EL+ G+++  S +G+GS F 
Sbjct: 672  IGIAEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSFESHKGQGSCFI 731

Query: 828  FSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEA 887
            F++V    + K+      +H +    +LV   N++ +  +++ +  +   ++  S   + 
Sbjct: 732  FTMVLHQGEFKLMAPEALLHEMTCSVLLV---NEAQQACVEAAIARLGGKLLPGSPIRDW 788

Query: 888  LSEIQQKPF---DMLFVDWNMPGMNGIELL--TRVKTLGLRGHMKSFLVTAYG----REI 938
            L++    P     +L V+     +  ++ L  T   T      + +F  +A G    R I
Sbjct: 789  LNQDAPVPDVLPHVLIVEQRHSLLTDLDSLWPTLTATHKRLPRVLAFQKSADGNKALRNI 848

Query: 939  NLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKT------NEAHHNSRPNFAGQ 992
             L+  N+ L+ +  ++         A   S G+E+V  +        EAH        G 
Sbjct: 849  ELEYLNNPLLFSEFMQK------FGAPKASSGVENVHPQVTPIISEEEAH-----RIKGA 897

Query: 993  SLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFD-----LVLMDMQMPV 1047
             +L+V+DNE+N EVALG+L +  L  V A +GQEAL +L   + +      +LMD QMP+
Sbjct: 898  RVLVVDDNEINIEVALGILSELPLEFVRAINGQEALTKLRECEQEGLGVHCILMDCQMPI 957

Query: 1048 MDGITATEHIRANPRWHSL---PIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQV 1104
            ++G   T  IRA     +    PI+AMTA+AM  + ++C++AGMND+++KPI  ++  + 
Sbjct: 958  LNGYDCTRAIRAGEAGEAFVDTPIIAMTASAMMGERDKCIEAGMNDYITKPIVAERLQE- 1016

Query: 1105 LRHFLQVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGV-DLEQAIFRIGGNQQRYFEI 1163
                 +V+D         + P+  + A +  + +     V + + A+ R+  N+  + EI
Sbjct: 1017 -----KVTDWLISVCEFGDLPTLVEAAPHEEIQVKDEDYVWNRQLALSRLMNNEVLFAEI 1071

Query: 1164 LRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQ--LAAEMEQSLE 1221
             + + D+   ++  +   I A+D+    +++H LKG ++++G   L +  L+ EME  ++
Sbjct: 1072 CQMYHDTSPAQVGELEEAIAAKDYEKVRQLSHGLKGLSSSIGAIQLQEQFLSLEMEAKMK 1131