Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  429 bits (1102), Expect = e-123
 Identities = 259/664 (39%), Positives = 392/664 (59%), Gaps = 18/664 (2%)

Query: 455  QNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNE--- 511
            ++AEQ RL+E +           +DA  + ++    D + +  N  +  ++G  +NE   
Sbjct: 573  ESAEQLRLSEERY-------HLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPA 625

Query: 512  VIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRAD 571
            ++    + + P +         Q L     + + E  +   +G+   +L         +D
Sbjct: 626  LVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSGMYHWVLSRGRVVEFTSD 685

Query: 572  -KVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAH 630
             +   +VG   D+T  K  E  L +AK+ A++ +  K +FLANMSHEIRTPMNAI+GM  
Sbjct: 686  NQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQ 745

Query: 631  LALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVT 690
            LA  T L   Q  Y+ +   SA++LL IINDILDFSK+EAGKL +ER+ F LD VLD+  
Sbjct: 746  LASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHAL 805

Query: 691  AVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVS 750
             + +LKAQEKG+E L+       L L GDPLRLGQV++N+  NAVKFT  GEI L     
Sbjct: 806  DLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDV 865

Query: 751  QLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELM 810
               + ++TL+F V+DTGIGI++++ + LFDAF+QAD S TR+YGGTGLGLSISK LV +M
Sbjct: 866  GERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMM 925

Query: 811  GGQITVHSEEGKGSTFEFSVVCGL-QDAKMRDISQPVHGLADKRVLVVDDNDSARHILDS 869
            GG + V SE G GSTF F++   + ++A+++ +  P   + + + LVVDDN +A  I  +
Sbjct: 926  GGTMQVQSELGVGSTFSFTISFEIAEEAEVKPLIVP-EVIGNLKTLVVDDNPTALQIYST 984

Query: 870  LLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKS- 928
             +    F+V T SNG EAL +++ +P D+L +DW MP M+G+E++  +  +   G ++  
Sbjct: 985  AMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVEVIKALDAMVADGRLEKR 1044

Query: 929  ---FLVTAYGREINLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNS 985
                ++TAY  E   +  +   + A++ KP   S L D I+ ++  +   +         
Sbjct: 1045 PVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFDEIIAAFIDKPKINPAAALPVEG 1104

Query: 986  RPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQM 1045
                 GQ +LLVEDN +NQ+VA  LL+  G  V VA +GQ AL+ ++   +D VLMD+QM
Sbjct: 1105 NATGTGQ-ILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQM 1163

Query: 1046 PVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVL 1105
            PVMDG+TAT+ +R       LP++AMTA+AM+ D E+ L AGMN H++KPI +++ +  L
Sbjct: 1164 PVMDGLTATKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTL 1223

Query: 1106 RHFL 1109
              ++
Sbjct: 1224 AQWI 1227



 Score = 45.1 bits (105), Expect = 4e-08
 Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 464 ERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPA 523
           ER+  E + L + +LD+ P  +     +GK+L  N     ++G   +E+I ++ Q +   
Sbjct: 451 ERREREYALL-RSLLDSIPEAIIFKDKEGKYLGCNKSAERMLGYTESEMIGQDSQTMTSN 509

Query: 524 EVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDM 583
           E + R  A  + +  +++   Y+   V+  G    +   +  F +R  ++ G++ +  D+
Sbjct: 510 EQSMRIRAEDERVLSERTPLRYQ-EKVELAGKPVLLDTLKLPFYNRRGELLGLIAVWRDV 568

Query: 584 TERKEMEDELRKAKE----AADAMSQAKGDFLANMSHEIRTP 621
           T   E  ++LR ++E    A DA+     D+  +    I  P
Sbjct: 569 TREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNP 610