Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  284 bits (727), Expect = 3e-80
 Identities = 174/454 (38%), Positives = 263/454 (57%), Gaps = 22/454 (4%)

Query: 535 VLTQQQSSQNYEVSLVDYTGVQREML-VYEASFSDRADKVNGIVGILLDMTERKEMEDEL 593
           V+  +++    E+ L D   ++R+ + +Y      + +   G + +  D+TERK  E EL
Sbjct: 463 VVEDRRAVLGEEIRLADGRVLERDYIPIYLFPQVAQPEDYRGHLWLFRDITERKHAELEL 522

Query: 594 RKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAK 653
           ++AKEAA++ ++AKG+FLANMSHEIRTPMN ILGM  LAL++ L   QR Y+  +  SA 
Sbjct: 523 QQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQRDYLEMVKSSAD 582

Query: 654 NLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIP 713
            LL IINDILDFSK+EAGKL +E I F+L  +L      + L+A+++ +    ++   + 
Sbjct: 583 ALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRSLTLRCEVPEEVA 642

Query: 714 LGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQD 773
            G +GDP RL QV++NL GNA+KFT +G++ +     ++  +   L FAV DTGIGI  D
Sbjct: 643 DGYLGDPGRLRQVLINLVGNAIKFTEEGQVAV-----RVEARDGLLHFAVSDTGIGIPAD 697

Query: 774 KLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFS---- 829
           K   +F+AFSQAD+S+TR++GGTGLGL+I  +LV LMGG + V S+ G+GSTF F+    
Sbjct: 698 KQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTFHFTARLE 757

Query: 830 VVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALS 889
            V G  ++   D  +    L   R+LV +DN   + ++ +LL      V    NG +AL+
Sbjct: 758 AVAGPAESGEADAGRGEVVLPPLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALA 817

Query: 890 EIQQKPFDMLFVDWNMPGMNGIELLTRVKTL-GLRG---HMKSFLVTAYG----REINLD 941
            +    FD++ +D  MP M G+E   R++     RG   H+    +TA      RE+ L+
Sbjct: 818 ALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLE 877

Query: 942 GENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVR 975
                 +D  + KP+       A+      E +R
Sbjct: 878 AG----MDGYVSKPLRRDEFFSAMADVLPPERLR 907



 Score =  140 bits (352), Expect = 8e-37
 Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 7/261 (2%)

Query: 994  LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITA 1053
            LL+ EDN VNQ++ L LLQ  G  V +A++GQ+AL  L    FDLVLMDMQMPVM G+ A
Sbjct: 782  LLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEA 841

Query: 1054 TEHIR----ANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109
            T  IR    A      LPIVAMTANAMA D E CL+AGM+ ++SKP+  D+F+  +   L
Sbjct: 842  TRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVL 901

Query: 1110 --QVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHF 1167
              +   +   ++  P    A+  A  +      L   D  +A+ R+ G+++ +  +++ F
Sbjct: 902  PPERLRQAGAAAAIPADGQAAVAAAPSESAPAALRRCDRAEAVARLEGDEELFAMLVKMF 961

Query: 1168 IDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPS 1227
             D   + L  +   +  QD  + +R AHTLKG  A         LA E+E   +   + +
Sbjct: 962  SDDLPNYLQRLNAALAGQDMEALSREAHTLKGLLATFSAGRGTALALELETRAKGGHVET 1021

Query: 1228 F-ELLQQAQSLLTQVDDELSA 1247
               L++Q Q  L  V  EL A
Sbjct: 1022 LGVLVRQLQEELELVRQELLA 1042



 Score = 34.3 bits (77), Expect = 6e-05
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 433 TMQQYHWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADG 492
           ++  YH   ++ + +    + S+  +QQ   E  + E S+  Q + DA    +    A+G
Sbjct: 225 SLPAYHGSLEIGELVQALNRASRRLKQQ---EETIEENSRFLQSLTDALGEGVIATDAEG 281

Query: 493 KFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQ---VLTQQQSSQNYEVSL 549
           +   +NA+   ++G    E++ K+       + A  F  +     + +   +S+ +   L
Sbjct: 282 RCTFINAEGERMLGWRRQELLGKDVHHTIHFQTATGFHVSQDECPLHSPAVASRPFRSEL 341

Query: 550 VDYTGVQREMLVYEASFSD----RADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQ 605
             +T  + +  V+  S         ++  G V    D+TERK  ED L        A+ +
Sbjct: 342 DAFT--RSDGSVFPISVVSVPLFEGERFTGTVAAFQDITERKRDEDFLMATTSRLSALIE 399

Query: 606 A 606
           +
Sbjct: 400 S 400