Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1288 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  216 bits (550), Expect = 1e-59
 Identities = 113/255 (44%), Positives = 169/255 (66%), Gaps = 5/255 (1%)

Query: 576 IVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635
           +VG L D+TER++ +     A+EAA+ +++ K +FLANMSHEIRTP+NAILG A L    
Sbjct: 639 VVGTLQDITERRQADATREAAREAAEQLARIKSEFLANMSHEIRTPLNAILGFAQLGQRE 698

Query: 636 PLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSL 695
             ++  R    RI+++ ++LLGIINDILDFSK+EAGK+ +E    N  +V+D+V  +++ 
Sbjct: 699 TPESRARIGFQRIHDAGQHLLGIINDILDFSKIEAGKMKLEMQPTNPCEVVDHVVKLMAA 758

Query: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQ 755
              +KG+E  ++   ++P    GD LRL QV++NL GNA+KFT QG I L     +    
Sbjct: 759 SVFQKGLELRVEESDNLPAAFDGDSLRLAQVLLNLLGNALKFTDQGSITL-----REERD 813

Query: 756 QVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQIT 815
              L ++++DTGIG+ +++L  LF AF Q     +R++GGTGLGL+I+K+LVE+MGG I 
Sbjct: 814 GQDLIYSIRDTGIGMNREQLGRLFHAFEQGHGGASRRFGGTGLGLTITKRLVEMMGGSIE 873

Query: 816 VHSEEGKGSTFEFSV 830
           V S  G+G+ F   +
Sbjct: 874 VESTPGQGTCFSIRI 888



 Score =  110 bits (275), Expect = 8e-28
 Identities = 84/265 (31%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 991  GQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA---DFDLVLMDMQMPV 1047
            G ++L+ EDN+ N+ V   LL+  G ++V   +G EA+E L+     DF L L D+QMPV
Sbjct: 1020 GIAILIAEDNQANRLVLRELLESEGASIVCVENGLEAVETLQRRGPQDFQLFLTDVQMPV 1079

Query: 1048 MDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRH 1107
            MDG TA   +  + ++  LPI+ +TAN    D + CL AGM DH+ KP ++D   + +  
Sbjct: 1080 MDGYTAAREV--SRQYPELPIIGVTANVTLEDRQNCLNAGMVDHVGKPYQLDALVEAILR 1137

Query: 1108 FLQVSDEQSFSSHSPNK--PSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILR 1165
             ++     S    +P    P+ + P      DL     +D  Q   R+G         LR
Sbjct: 1138 VVRSDARPSPLWQAPPNPLPTPTTPPPPPASDLDS-DAIDWPQLRSRLGVKPGLMERFLR 1196

Query: 1166 HFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSL----- 1220
             F++S     + +  L    D     R+ H L GSAANL     A LA  +E +      
Sbjct: 1197 LFLESNGRLPDELRDLACNPDLERLRRLGHALYGSAANLAAVPTATLARRLEYAAAAGEP 1256

Query: 1221 EQQVLPSFELLQQAQSLLTQVDDEL 1245
            E  VL   EL  Q + L   +   L
Sbjct: 1257 ESAVLAG-ELADQLERLFATIHQYL 1280



 Score = 40.8 bits (94), Expect = 8e-07
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 843  SQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQK---PFDML 899
            + P   L    +L+ +DN + R +L  LL +   ++V V NG EA+  +Q++    F + 
Sbjct: 1012 ADPQRRLGGIAILIAEDNQANRLVLRELLESEGASIVCVENGLEAVETLQRRGPQDFQLF 1071

Query: 900  FVDWNMPGMNG 910
              D  MP M+G
Sbjct: 1072 LTDVQMPVMDG 1082