Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  347 bits (889), Expect = 4e-99
 Identities = 247/712 (34%), Positives = 371/712 (52%), Gaps = 57/712 (8%)

Query: 421  IALLELGTVGMLTMQQYHWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDA 480
            IA + +G + +++M            L  A+  +  AE   L  ++ +E  Q  Q  LDA
Sbjct: 178  IAAIVVGFIALMSM------------LGWALTRASRAESALLRAKEEVEAIQ--QTTLDA 223

Query: 481  TPNPMYCLSA----DGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVL 536
            +   +  L      D   +  N +   + G  + EVI    +E++P+   E F +A Q +
Sbjct: 224  SAIGIAYLDTSNHEDRHVVLANRQMAAMFGYGSQEVIGLRAEELYPSR--ESFVSATQDI 281

Query: 537  TQQQSSQNYEVSLVDYTGVQREMLV--------YEASFSDRA----DKVNGIVGILLDMT 584
                      + +++   V R+ L+        +  + S +A    D   G+V    D+T
Sbjct: 282  ----------MPILEQGQVMRQELIMRRRNGECFWCAVSGKAINPDDLSRGVVWTFEDVT 331

Query: 585  ERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644
            ERK  E ELR A+E A+A ++AK +FLANMSHEIRTP   ILG+  L L+TPL+  Q +Y
Sbjct: 332  ERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLNEKQERY 391

Query: 645  VTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEF 704
            +     S K LL I+NDILD SK+EAGKL +   + +L  +L  +T V +  A +KG+EF
Sbjct: 392  IRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQKGLEF 451

Query: 705  LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVK 764
               I   IP  + GDP+RL Q+M NL  NA+KFT+ G + L    +++   +  LR  V+
Sbjct: 452  RYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRVEVR 511

Query: 765  DTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGS 824
            D+GIG+  +  + +FD F+QAD+S TR +GGTGLGL+I KQLVELM G I V S  G+GS
Sbjct: 512  DSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNSGEGS 571

Query: 825  TFEFSVVCGLQDAKMRDI-----SQPVHGL-ADKRVLVVDDNDSARHILDSLLTAMRFNV 878
             F F +     D  +  +       P+  L  D R+L+VDD ++ R +L   L      V
Sbjct: 572  CFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLAQAHCQV 631

Query: 879  VTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTL-GLRGHMKSFLVTAYGRE 937
               +NG EA++  +    D + +D  M GM+G E   +++   G R       +TA+   
Sbjct: 632  RQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQRRRTPIIALTAFVMR 691

Query: 938  INLDGENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSLLLV 997
             + +   +  +D  + KPV+   L+  I    G      +TN A     P F+G+ +LLV
Sbjct: 692  GDREKCLAAGMDDYLPKPVDAQTLIATI----GKWLEGRETNPAR---TPRFSGR-ILLV 743

Query: 998  EDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHI 1057
            +DN   +E +  LL+  G  V  A+ G+EAL+    ADFDLVLMD +MP +DG   T   
Sbjct: 744  DDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLVLMDCRMPGLDGCATTRAW 803

Query: 1058 RANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109
            RA  R     I+A+TA        +C +AGMND L+KP    +   +LR +L
Sbjct: 804  RARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQELVTLLRRWL 855



 Score = 75.9 bits (185), Expect = 2e-17
 Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 994  LLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITA 1053
            +LLV+D E N+EV    L      V  A +G EA+   E    D +LMD QM  MDG  A
Sbjct: 607  ILLVDDTEANREVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEA 666

Query: 1054 TEHIRANP-RWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFLQ 1110
            T  IR    +    PI+A+TA  M  D E+CL AGM+D+L KP++       +  +L+
Sbjct: 667  TRQIRIQEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWLE 724