Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  519 bits (1337), Expect = e-151
 Identities = 343/937 (36%), Positives = 519/937 (55%), Gaps = 46/937 (4%)

Query: 419  QPIALLELGTVGMLTMQQYHWLSQML-----------DDLSVAIQLSQNAEQQRLAERKV 467
            +P+ +   G + ML +Q ++ L Q +           D L V ++  + AE   LA + +
Sbjct: 341  EPVEVQGSGEIRML-LQNFNLLQQHIAAQNETIRQERDHLEVLVE-ERTAELVGLA-KSL 397

Query: 468  LEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAE 527
             + +Q  Q + DA    +  L+ D      N    +++G    E++++  +  +P E   
Sbjct: 398  RDANQEQQAVFDAARIGII-LTRDRIIRRCNRTIEEILGYEPGEILEQSTRIWYPDEAT- 455

Query: 528  RFAAAHQVLTQQQSSQNY---EVSLVDYTGVQREMLVYEASFSDRADKVNGIVGILLDMT 584
             F A  + + +  +   Y   E+ LV   G  R      A   DR     G+ G + D+ 
Sbjct: 456  -FLAVGERVREGLTRHGYFREELELVRKDG-SRFWGRIMAQVIDRNAPEKGMAGTVEDIG 513

Query: 585  ERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644
            E + +  E+ +AK  A+A +QAK DFLANMSHEIRTPMNA++GM HLAL T LD  QR+Y
Sbjct: 514  EERRILAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREY 573

Query: 645  VTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEF 704
            + +I  S+++LLGIINDILDFSK EAGKL++E+IDF+L+ VL++V++++S +A  KG+EF
Sbjct: 574  LRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEF 633

Query: 705  LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVK 764
            ++++   +P  L+GDPLR+GQV++N   NAVKFT +GE+ +   + +   Q+V LRFAV 
Sbjct: 634  VIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVH 693

Query: 765  DTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGS 824
            DTGIGI   +L  LF++F QAD+S TR+YGGTGLGL I+K+L ELMGGQ+   SE G+GS
Sbjct: 694  DTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGS 753

Query: 825  TFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNG 884
            TF F+   G + +  R  + P   L  +R+LVVDD+D AR ++  +L +M F V    +G
Sbjct: 754  TFWFTARLG-RSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSG 812

Query: 885  FEALSEIQQ-----KPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGR-EI 938
               L+E+Q+     +P+D++F+DW MP M+G+     ++ L L       ++TAYGR E+
Sbjct: 813  NRCLAELQRASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDEL 872

Query: 939  NLDGENSKL--VDALIVKPVNPSNLLDAIVTSYGIEHVRHKT--NEAHHNSRPNFAGQSL 994
                  S L  ++ +++KPV+PS L + ++     E   H     EA  +  P  AG  +
Sbjct: 873  ARSAGESGLQGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAP-LAGLRV 931

Query: 995  LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054
            LLVEDN++NQEVA   L    + V VA+ G  ALE++    +D++LMDMQMPVMDGI AT
Sbjct: 932  LLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAAT 991

Query: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEV-DKFYQVLRHFLQVSD 1113
              IR       LPI+AMTANAM  D ERCL AGMNDH++KP++  D   ++L+     + 
Sbjct: 992  REIRRQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWLAPGAP 1051

Query: 1114 EQSFSSHSP------NKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHF 1167
              +  + +P        P  + PA         + G+D    + +    +  Y  ++  F
Sbjct: 1052 LVAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLYLRLMDKF 1111

Query: 1168 IDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPS 1227
            +  Q D    +   I+A DW  A R AHTLKG +A +G   L  LA  +E ++ Q+  P 
Sbjct: 1112 VSGQRDAPQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLEHAIRQRDPPD 1171

Query: 1228 F--ELLQQAQSLLTQVDDELSAWEHQHKEPLLAENLDW----GLWYQQLQQAINDYDVTA 1281
               +LL +    L  + D ++A     + P     ++W     +  +  QQ  ND     
Sbjct: 1172 LLQDLLGKIADSLPPLVDAIAAVLATQEVPAAKATVNWMQVEEVCARLAQQLANDDFACE 1231

Query: 1282 LSLSKSIRQVSQWDSAQQAALISAIEDFDFEQAKALL 1318
              L +    +          L  A+ DFDF QA+A L
Sbjct: 1232 KLLDEHEALLHGALGEDFPPLARAVRDFDFTQAQARL 1268