Pairwise Alignments

Query, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  256 bits (654), Expect = 6e-72
 Identities = 183/552 (33%), Positives = 293/552 (53%), Gaps = 46/552 (8%)

Query: 447 LSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMG 506
           L++ +++ Q A ++R AE +  ++S L+  +L   P+P++     G F+  N  F  +MG
Sbjct: 281 LALWVRVLQAAVKRRTAELE-RQRSHLHT-LLRGIPDPLWLKDEAGVFIACNPAFERMMG 338

Query: 507 LYNNEVIDKEPQEIFPAEVAERFAAA-HQVLTQQQSSQNYE-VSLVDYTGVQREMLVYEA 564
               E+I     +    E A+ F     QVL       N E ++  D +G QR     + 
Sbjct: 339 RPEQEIIGCSDYDFVSREQADFFRDKDRQVLVAGTPQSNEEWITQADGSG-QRLFETVKT 397

Query: 565 SFSDRADKVNGIVGILLDMTERKEME------------------DELRKAKEAADAMSQA 606
              +   KV G++G+  D+TERK +E                  +EL +A++AA+A + A
Sbjct: 398 PIVEPQGKVLGVLGVARDITERKRLEAEVSNYSHHLEELVAERTEELARARDAANAANVA 457

Query: 607 KGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFS 666
           K  FLANMSHEIRTPMNAI+G+ H+         Q+  + +I+++A +LL IINDILD S
Sbjct: 458 KSAFLANMSHEIRTPMNAIIGLTHILKKGEPSPQQQDRLDKIDDAASHLLSIINDILDLS 517

Query: 667 KMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQV 726
           K+EA +L +E     L  ++ ++ ++++  A++K I    ++DP +P  L+GDP RL Q 
Sbjct: 518 KIEAERLVLEEQPVELGRIVSHIFSMLAEGARKKDIVLKSEVDP-LPPYLLGDPTRLTQA 576

Query: 727 MVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQAD 786
           ++N   NAVKFT  G + L  +V +L    V LRF V+DTGIGIA +    LF  F QAD
Sbjct: 577 ILNYASNAVKFTEWGSVTLRIKVLELTPADVFLRFEVEDTGIGIAPEVQPLLFAPFQQAD 636

Query: 787 NSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKM---RDIS 843
            S +R++GGTGLGL I+++L ++MGG   V S  G GSTF FS    L +A+     D  
Sbjct: 637 GSTSRRFGGTGLGLVITRRLAQIMGGDAGVDSRLGFGSTFWFSARLKLGEARAALPEDGP 696

Query: 844 QP-------VHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQ--K 894
           +P       +       +L+ +D+   + +   LL      V   ++G EA++ +++   
Sbjct: 697 RPDSAEGELLQHYRGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTT 756

Query: 895 PFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKL-----VD 949
           P+ ++ +D  MPGM+G+E    ++ L     +    +TA     N  GE+ +      ++
Sbjct: 757 PYALVLMDMQMPGMDGLEATRHIRRLPGMESLPIISMTA-----NAFGEDRERCLEAGMN 811

Query: 950 ALIVKPVNPSNL 961
             + KPVNP  L
Sbjct: 812 DFVPKPVNPEVL 823



 Score =  117 bits (292), Expect = 6e-30
 Identities = 63/124 (50%), Positives = 81/124 (65%), Gaps = 2/124 (1%)

Query: 988  NFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHAD--FDLVLMDMQM 1045
            ++ G  +LL ED+ +NQEVA  LL+  GL V +A  G EA+  LE     + LVLMDMQM
Sbjct: 708  HYRGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYALVLMDMQM 767

Query: 1046 PVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVL 1105
            P MDG+ AT HIR  P   SLPI++MTANA   D ERCL+AGMND + KP+  +  Y +L
Sbjct: 768  PGMDGLEATRHIRRLPGMESLPIISMTANAFGEDRERCLEAGMNDFVPKPVNPEVLYAML 827

Query: 1106 RHFL 1109
              +L
Sbjct: 828  LKWL 831